| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2721 |
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| Symbol | |
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| ID | 5611205 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3285768 |
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| End bp | 3286469 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640933640 |
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| Product | DNA-binding response regulator |
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| Protein accession | YP_001474456 |
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| Protein GI | 157375856 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0809288 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAAGTA AACCTGCTTC ACTTTCGATA TTACTCGTTG AAGATCAACT CAGTGTCGCA
CGCAACATAT CTGAGTACAT GGAAGAGAAA GGCCATGTAT TCGACTTTAC CGGCCAAGGT
CAGCATGGGC TCGATCTCGC CTTAGAAAAT TACTATGACC TGATCATACT CGACCTGAAC
TTACCCGTGA TGGACGGTCT TGAAGTCTGC CAGCAAATAC GAGCAAAGTC GGCGCGCCAC
ATCCCCATAT TAATGTTAAC AGCAAGAGAT AGTATCGAAG ATAAGGTGTC TGGCTTTACA
GCTGGGGCTG ACGATTACTT AACAAAACCT TTTTCCTTAC AAGAACTTGA AGTTCGATGC
TTAGCGCTTT CCAGACGTCA CCTATTGCAG ACTAACGACA TACTCACCTT AGGTTGTTTA
AGCGTTGATC GAAAGCGACA ACAGGCCACG CGTGATGGAA AAGTGCTTAA TTTGCATGCC
ATGGGCTTTC GTATTTTGAC AGAACTCGCA GAGGCTTACC CACAAGTGGT TAGCCGTTCA
GTTTTATCGC AAAAAATATG GGGCGACGAA CCTACCGAGT CCGATGCAAT GCGCTCTCAT
ATTTATCAGT TACGTAATGT ATTGGACAAA CCGTTTGATT ATCCGATCTT GAAAACGGTA
CATGGTATTG GTTTTACTTT GGATATCAAC AATGAAGAAT AG
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| Protein sequence | MTSKPASLSI LLVEDQLSVA RNISEYMEEK GHVFDFTGQG QHGLDLALEN YYDLIILDLN
LPVMDGLEVC QQIRAKSARH IPILMLTARD SIEDKVSGFT AGADDYLTKP FSLQELEVRC
LALSRRHLLQ TNDILTLGCL SVDRKRQQAT RDGKVLNLHA MGFRILTELA EAYPQVVSRS
VLSQKIWGDE PTESDAMRSH IYQLRNVLDK PFDYPILKTV HGIGFTLDIN NEE
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