| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2705 |
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| Symbol | |
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| ID | 5614088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3270042 |
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| End bp | 3270902 |
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| Gene Length | 861 bp |
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| Protein Length | 286 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640933624 |
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| Product | regulatory protein, LysR |
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| Protein accession | YP_001474440 |
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| Protein GI | 157375840 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGTGT ATGAGTCTGG CTCAATAACC TCGGCATCAG TTGATTTGGG TGTAATGCCT
TCAACCATCA GTCGCAGCTT GTCCAGACTT GAACTTAAGC TAGACACCTC GTTAATCATG
CGTAATACGA GAAAGATAGA ATTTACTAAT GACGGACTAA AATTACTTGC CCATGCCAAG
GAGATAACTG CATCAGTTAA CAATATTGAA CATGAATTCA GAACTAACGA CTCAACGCCA
TCTGGGACCT TGCGAGTTAA TGGCGCTTCT CCAGTCTTAG TTCATCTGGT TTGCCCGATT
ATAAAGAAGT ATTTGCAACT TTATCCAGAC GTGAACATTG AATTGCAAAA CAGTGAAGAG
ATAATTGATA TTATTGAAAG CAAAGCTGAT ATCGCGTTAC GAGTCGCTCC CATAACTGAG
TCGAGTTACC ACGTTACTCA TATTGGCTCA AGCAAACGGC GTTTATTAGC CAGTTCGGAG
TACCTGCGTA GGTATGGCTT CCCAAGTTCA ATTGAAGATC TTAAAAATCA TATCTTGCTA
GGCCTCGAAG GCCCATCCAT ATTAAATACA TGGCCAATTG AAGATGGTAA AGGAAAAAAG
TTAAAAATTT GCCCTCGAGT TGTAGCGTCC AGCGGTGAAG TATTGAGGAA GTTGACTCTC
TCTGGTGCTG GCATTGCCTG TATCTCTGAC TTTATGACCA AATCAGACCG GAATAATGGA
AAATTGATCG AGGTATTGAA GGAGCAAACT GTACATGATA AACGAGATAT CAGCGCTGTG
TGCTATCGCG GAACCAGTCC TTCAGCCAAA GTATCGACAT TTATCGATTT TTTAAAAGAT
GAATTACCTA TACTTTTATA G
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| Protein sequence | MAVYESGSIT SASVDLGVMP STISRSLSRL ELKLDTSLIM RNTRKIEFTN DGLKLLAHAK
EITASVNNIE HEFRTNDSTP SGTLRVNGAS PVLVHLVCPI IKKYLQLYPD VNIELQNSEE
IIDIIESKAD IALRVAPITE SSYHVTHIGS SKRRLLASSE YLRRYGFPSS IEDLKNHILL
GLEGPSILNT WPIEDGKGKK LKICPRVVAS SGEVLRKLTL SGAGIACISD FMTKSDRNNG
KLIEVLKEQT VHDKRDISAV CYRGTSPSAK VSTFIDFLKD ELPILL
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