| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2688 |
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| Symbol | |
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| ID | 5611835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3244470 |
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| End bp | 3245087 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640933607 |
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| Product | lysine exporter protein (LysE/YggA) |
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| Protein accession | YP_001474423 |
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| Protein GI | 157375823 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1280] Putative threonine efflux protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.666763 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCAGATC TCGCCCTACT CGCCGTTTTT ATACCAACCT TCTTCTTCGT ATCGATTACG
CCTGGAATGT GTATGACACT TGCCATGACG CTGGGAATGA GTATCGGCAT CAAACGAACC
TTTTGGATGA TGATTGGAGA GCTCGTTGGC GTAGCGCTAG TGTCCATCGC TGCCGTTATG
GGGGTAGCCA GCATCATGCT CAACTATCCG CAACTCTTTG AGGTGTTAAA GTGGGTGGGT
GGACTCTACC TTGCCTATAT CGGCGTACAG ATGTGGCGTG CCAAAGGCAA GATGGCCAAG
CTTGATGACC AGTCAGGCAG CATCAGCAAC GGCGCACTCA TTTCTCAAGG CTTTATCACC
GCCATCGCCA ACCCCAAAGG CTGGGCCTTC ATGATATCTC TCCTGCCTCC CTTCATTAAT
GTCGATAAGG CTCTCGCCCC TCAGTTCATC ACCCTGTTGA GTGTGATCAT GTTTACCGAG
TTTGTCAGCA TGACGGCTTA TGCTACCGGC GGGAAGAGCC TGAAAGTATT CCTGACCAGA
GGCGATAACA TCAAATGGAT GAACCGTATA GCGGGTTCAC TCATGGTGGG CGTGGGCTTC
TGGTTGGCGC TGGGTTAA
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| Protein sequence | MPDLALLAVF IPTFFFVSIT PGMCMTLAMT LGMSIGIKRT FWMMIGELVG VALVSIAAVM
GVASIMLNYP QLFEVLKWVG GLYLAYIGVQ MWRAKGKMAK LDDQSGSISN GALISQGFIT
AIANPKGWAF MISLLPPFIN VDKALAPQFI TLLSVIMFTE FVSMTAYATG GKSLKVFLTR
GDNIKWMNRI AGSLMVGVGF WLALG
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