| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2680 |
|---|
| Symbol | |
|---|
| ID | 5611856 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3237320 |
|---|
| End bp | 3238243 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640933599 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001474415 |
|---|
| Protein GI | 157375815 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2515] 1-aminocyclopropane-1-carboxylate deaminase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.36166 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.827346 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAT TATCCCATAC CCCTGTAGAT TCCATTGAGA TGTTTGACAG AGAGATTTTT
GTTAAACGAG ACGATCTTCT GCATCCGGAG TTTTCCGGCA ATAAGGCCCG CAAATTTGCC
TATTTTCTCG AGCATGACTT CCCGGATGTT CATAAGGTTA TCGGCTATGG TTCTGCTCAG
GCTAACTCAC TCTACTCTAT GTCTGCGCTC GCGAAGTTGA GAGGATGGCA GCTGGACTTT
TATGTCGATC ATATCGCCTC ACACATAAAA ACACAGAAAG AGGGCAACTA TGTCAGTGCT
TGCCAAAATG GCGCCAATAT CATTAATCTC AGCGAGCAGA GTGATCGAGA GGGACGTGAT
ACCTTGACCT ATATTGAGGA GCAAGTTTTG CCGAATCAAG AGCATGCTGT GTTTGTTCCT
GAGGGGGGAA GGTGTGGTTA TGCTGAATTT GGCGTGTTTA AACTTGCCGA GGAGATCTGC
GAGTGGTTTA AGGAGCAGGC TCTTTCATCT CTCATCGTAT TTCTTCCTTC CGGTACCGGT
ACAACTGCTT TATTTCTGAA TAAATATTTT GTTGGCTCGG GGTTAGACAT TCGCGTCTTA
ACTTGTGCTG CCGTTGGTGG TGATGGATAC CTGAAACATC AATTCGAAAT GCTCAGTGGT
GAGGTGGCGC ATCATCCTGA GATTGTTGCT ATGCCCAAGA AATTTCATTT CGGTAAGCTC
TATCGAGAGT TTTTTGATAT GTGGAAACGG GTCTGCAATA CAGGTATCGA ATTTGAACTT
CTCTATGATC CCTTAGGCTG GATGGCACTA GAGCATTATC TGAATATGAC GATGGATAAA
ACACCTATCA TGTACCTTCA TCAGGGGGGG CTACTGGGCA ATGTCAGTAT GTTGCCTCGA
TATCAACGTA AATATGGCTG CTAA
|
|---|
| Protein sequence | MMKLSHTPVD SIEMFDREIF VKRDDLLHPE FSGNKARKFA YFLEHDFPDV HKVIGYGSAQ
ANSLYSMSAL AKLRGWQLDF YVDHIASHIK TQKEGNYVSA CQNGANIINL SEQSDREGRD
TLTYIEEQVL PNQEHAVFVP EGGRCGYAEF GVFKLAEEIC EWFKEQALSS LIVFLPSGTG
TTALFLNKYF VGSGLDIRVL TCAAVGGDGY LKHQFEMLSG EVAHHPEIVA MPKKFHFGKL
YREFFDMWKR VCNTGIEFEL LYDPLGWMAL EHYLNMTMDK TPIMYLHQGG LLGNVSMLPR
YQRKYGC
|
|---|
| |