Gene Ssed_2647 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2647 
Symbol 
ID5612757 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3202148 
End bp3203062 
Gene Length915 bp 
Protein Length304 aa 
Translation table11 
GC content45% 
IMG OID640933566 
ProductDNA-directed DNA polymerase 
Protein accessionYP_001474382 
Protein GI157375782 
COG category[L] Replication, recombination and repair 
COG ID[COG2812] DNA polymerase III, gamma/tau subunits 
TIGRFAM ID[TIGR00678] DNA polymerase III, delta' subunit 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.11798 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCTGC CTTGGTTGAC CCCTGTTATC GGAGATTTTA GTGAGCAACT AAAATCACAG 
CATATCGGTC ATGCATACCT TGTTGGGGTG CATAACGGAT ATGGTGGTGA AATTCTCTCT
TTAGCCTTGG CAAAAGCCGC ACTATGCCAA TTGGTGACAT CGCAGGGAGC ATGCGGATTC
TGTAAAGCGT GTCAGTTAGT CGAGGCGAAT AATCATCCGG ACTTTTATCA CATTGTGGCC
GACGGAAATC AAATTAAGGT CGATCAGGTG AGGGAGCTTT GTCGAAAGCT GACGTCGACG
TCACAGCAAG GCGGAAGGCG CGTTGCCGTT ATCAGTAATT GTGAAAAGTT AAACCAGGCC
TCGGCGAATG CCCTGTTAAA AACACTCGAA GAGCCCGGTA ACGAGACATT ACTGCTGTTA
CAGTCTGATA CGCCTTCGCG GTTGATGGCT ACCATAAGTA GTCGCTGTCA ACGGATCCAT
TTTCAGGCAC CAACACGCGA AGAGATCAAG GCTTGGCTAT CACTGGTAGC GGGTGTTAAA
TCCGATGTAA CCTGGTGTCT GCCGGTGATG GGCGGACCCT TGGAGTTAGC TAAGGCACTG
GAAGGCGACC GATATGCCGC CTTGCTTCAG CTAAGAAAAG ACTGGTCTCA AAGTTTGTCC
TCTGGTCACC TGTGTGCTAA TTTAATTAAT ATAAATGAAA AGCAAGTTTC TGATGCACTT
AAAGTTTTAT ACCTACTTTT AAGGCAGAAA TTAGTGAAAC AGACAGAATT AGATGCATTG
TTGAGAGTGA GAATAACAGA GTTCAGCGCG AAGGTGATGG CGACTTACCA TCGTCTTTTA
CTTATGCCGA ATGTAAATTA TTTAGCCTTA TTTCAATCAT TTATATTAGA ATACAACGAG
ATGGGCAAAA AGTGA
 
Protein sequence
MDLPWLTPVI GDFSEQLKSQ HIGHAYLVGV HNGYGGEILS LALAKAALCQ LVTSQGACGF 
CKACQLVEAN NHPDFYHIVA DGNQIKVDQV RELCRKLTST SQQGGRRVAV ISNCEKLNQA
SANALLKTLE EPGNETLLLL QSDTPSRLMA TISSRCQRIH FQAPTREEIK AWLSLVAGVK
SDVTWCLPVM GGPLELAKAL EGDRYAALLQ LRKDWSQSLS SGHLCANLIN INEKQVSDAL
KVLYLLLRQK LVKQTELDAL LRVRITEFSA KVMATYHRLL LMPNVNYLAL FQSFILEYNE
MGKK