Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2647 |
Symbol | |
ID | 5612757 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3202148 |
End bp | 3203062 |
Gene Length | 915 bp |
Protein Length | 304 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640933566 |
Product | DNA-directed DNA polymerase |
Protein accession | YP_001474382 |
Protein GI | 157375782 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2812] DNA polymerase III, gamma/tau subunits |
TIGRFAM ID | [TIGR00678] DNA polymerase III, delta' subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.11798 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCTGC CTTGGTTGAC CCCTGTTATC GGAGATTTTA GTGAGCAACT AAAATCACAG CATATCGGTC ATGCATACCT TGTTGGGGTG CATAACGGAT ATGGTGGTGA AATTCTCTCT TTAGCCTTGG CAAAAGCCGC ACTATGCCAA TTGGTGACAT CGCAGGGAGC ATGCGGATTC TGTAAAGCGT GTCAGTTAGT CGAGGCGAAT AATCATCCGG ACTTTTATCA CATTGTGGCC GACGGAAATC AAATTAAGGT CGATCAGGTG AGGGAGCTTT GTCGAAAGCT GACGTCGACG TCACAGCAAG GCGGAAGGCG CGTTGCCGTT ATCAGTAATT GTGAAAAGTT AAACCAGGCC TCGGCGAATG CCCTGTTAAA AACACTCGAA GAGCCCGGTA ACGAGACATT ACTGCTGTTA CAGTCTGATA CGCCTTCGCG GTTGATGGCT ACCATAAGTA GTCGCTGTCA ACGGATCCAT TTTCAGGCAC CAACACGCGA AGAGATCAAG GCTTGGCTAT CACTGGTAGC GGGTGTTAAA TCCGATGTAA CCTGGTGTCT GCCGGTGATG GGCGGACCCT TGGAGTTAGC TAAGGCACTG GAAGGCGACC GATATGCCGC CTTGCTTCAG CTAAGAAAAG ACTGGTCTCA AAGTTTGTCC TCTGGTCACC TGTGTGCTAA TTTAATTAAT ATAAATGAAA AGCAAGTTTC TGATGCACTT AAAGTTTTAT ACCTACTTTT AAGGCAGAAA TTAGTGAAAC AGACAGAATT AGATGCATTG TTGAGAGTGA GAATAACAGA GTTCAGCGCG AAGGTGATGG CGACTTACCA TCGTCTTTTA CTTATGCCGA ATGTAAATTA TTTAGCCTTA TTTCAATCAT TTATATTAGA ATACAACGAG ATGGGCAAAA AGTGA
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Protein sequence | MDLPWLTPVI GDFSEQLKSQ HIGHAYLVGV HNGYGGEILS LALAKAALCQ LVTSQGACGF CKACQLVEAN NHPDFYHIVA DGNQIKVDQV RELCRKLTST SQQGGRRVAV ISNCEKLNQA SANALLKTLE EPGNETLLLL QSDTPSRLMA TISSRCQRIH FQAPTREEIK AWLSLVAGVK SDVTWCLPVM GGPLELAKAL EGDRYAALLQ LRKDWSQSLS SGHLCANLIN INEKQVSDAL KVLYLLLRQK LVKQTELDAL LRVRITEFSA KVMATYHRLL LMPNVNYLAL FQSFILEYNE MGKK
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