| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2600 |
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| Symbol | |
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| ID | 5610706 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3151935 |
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| End bp | 3154547 |
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| Gene Length | 2613 bp |
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| Protein Length | 870 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640933519 |
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| Product | multi-sensor signal transduction histidine kinase |
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| Protein accession | YP_001474335 |
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| Protein GI | 157375735 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0842783 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCAACT CCAAGATCAG TAAACCTAGA ATGCAGGCTC TGCATTGGAG CGATAGTTTA
CCGGTCAAGT TTTCTTTTAT TCAGTTTATT ATCGCCTCAC TGATCATCAT ATCCAGTGTA
TGGATACTCT TCACCATAGA GAAAAGCCAC CAGCTACAGG CACAGATCAC ATTAAGCCAG
AACCAAGGCT TGGCCATAGT TGCAAAGCTG CAACAAACAA CGTCGAAAAT AGAGAGTCTG
GCCGTCTCTA TCGCCTCTTT AGGTGAGATA TACCGCCATG ACAGTCAGGT ATTGGAGAAG
TCCATTCCTG CACTGTTGGA CAAAAATGGA AAGTATGATC TGATCTCCGG CGGTGGGATC
TGGCCGGAAC CGGGCAGCTT CGATGAAACT AAACAGCTCG ATAGTCTATT CTGGGCCAGA
AACAAGGCTC TGGAGCTGGA ACGGGTCGAT GACTACAACC GTCTAAATGG GCCCGGATAT
CATTCTGAGA GCTGGTACAA ACCTACCCGC TTCTATCCCA GTGGCACCAC ATTTTGGTCT
GAAACGTATA TCGATCCGTT TACCAATGAG GCAATGCTTA CGGCATCTGT TCCTATGTGG
GTTGAACATC AATTCGTAGG TGTCTCTACG GTCGATGTCA CGCTACTGGG TTTAGGTCAC
TTTTTTCATC AGGCGATGAA TGATAACCAT GGCTATATGT ATGCTCTCGA TCACAGCAAC
AGAGTATTGG CGGCCCCCAA AAAAGATAAT CGAAATAACA TTTTTGATAA GCGCGCTTTC
TTCAAGCCAT TTGCCAGCTT TACTGCCAAT AACCCCGTAT TTGAACCCAT AAACGGAAAA
TTGATTGAAC TGGATGCCAA GTTGATTGAA GAGTCACAGG AGAACCCTGC TTATAATCAA
TTTCAGCTAG CCGACTTGAT GGACACCACC CATTTTTCAC AAAGAGAAAA ACTTGCCGCA
CTCATCAACC TCAATGCACA AGGTAAGCCA AAATCGACCT CATTAGTGGC CTCCTTCGAG
CTGGGTCATG ATCCTATTCT CGATGAGCCG ACATTGGTAT CCATCTTCAT GATGCCAAAG
ACTTTTTGGA AGATTGTACT CGTCACACCA CTCTCCTCAA TGAATGATAA GGCCAATATC
ATTGCCGCCA GAATGGGGAT ATACCTGCTA CTCATGCAAC TGGCAGCGCT GATTTTACTG
TTTATGCTGC AACATAAGCT GTTCATCAGA CCCATTTCCA GAATGGTTAA CGCACTTCAG
GGGAACCAGT TAGCAAAATT AGAGTTAGAA GCCACGATAA GTAAAGATGA GTTGGGACAA
TTAGCTAAAG CATTTATCTC TCGAAGTCAT CAATTGGAGG TGGCTTTCGC CAGCCTCGAC
GCCAGTAATT TAGCCTTAGA GGAGCAGCTA ACGGTTCAAA GGATTGCTCA AACAGAGTTA
AAACTAAGAA AGAAGCAGCT TAATTCGCTG CTGAACTCAT CACAGAACCT CATTAGCATC
AAAGATATCG ATGGCTCTTA TATCTTAGTC AATGACCGAT TTTGCGAAGT TATCGGTATT
GAACGACACA GTATCATAGG GACCAAGGAC AGCCAGATTT TTCCGGCTCA TATTGCCGAG
TTAATTCTGA AGCACGATAA CATCACCCTA AAGACACAAA GCCCACAGAG CTTCGAACAG
CCTATCCCGT CGGTGCAAGG CGAAATTGTT TATCAAGTCA CTAAGTTCCC CATTAAGGAT
GATGATGGCA CCATGACTTC GATAGGCAGC ATGGCATTTG AGATCGGCTC GCAAAAAATC
ATCAGTCAGG AGTTACATGA CAAGAATGAA TCACTCAATT TAGAGCTCGC AAAATATTCA
CATCAGCTAT TGATGAGCAA ACAGGAGAAT CAACAGCTGC AAGAGAAGGC AAACACACTC
GAATTATCAA TCAATAAGCT CAATAACTTA CAGCGTGTAG AGGTCAAAAA TCATGAACTG
TTTCCACAAC TGTTCGCAAC TTTGATAAAG CAGCACACTC AAGAGCAAGA CAAGTTACTG
TCAATCATCT GTAACTACAA AACGGGCATT AGTCAGGAAA ATTATGATGA GATCGTCGGC
CTCTTGACAG AACATACCGA TAAATTACGC CATTTCCAAC ATCTGATTGT GGGTAAAGAG
ATGGCAATTA AATCGATTAA CTTGTCCCAC TATCTGTCAC ATTTTCTAGT CGTTATAGAG
CCTCAGCTCA CCGAACAAGA GATACAGGTA AGGGTCGTTT GTGATAGTAA ACTGAGTATC
AACCGCTCTT CATGGGATCT GTTACTCATA TTTTACTCCT TGATCAATAA CTGTCTTTCT
CATGCATTCA CCAGACAGCA AAAAATTAAG GTACTGTCGA TAGAAGTCGA GCTGCAGGAT
GATAACTTAA TTATTACGGT AGAAGATAAT GGTCAGGGGA TCGCTGACGA CAAACTGGCG
GCTCTGAATT CACAACTGGG ATCAAATGCC TATTCCGGCA CGCTACCCAG TCTGGATGCC
TGGGTAAGAT CAGAACTAAA CGGTACATTA GAGGTCAAAT CGGCACTGAA CACGTTTACC
CGGGTGATCT GTACGCTTCC GTTCGAACGT TAG
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| Protein sequence | MGNSKISKPR MQALHWSDSL PVKFSFIQFI IASLIIISSV WILFTIEKSH QLQAQITLSQ
NQGLAIVAKL QQTTSKIESL AVSIASLGEI YRHDSQVLEK SIPALLDKNG KYDLISGGGI
WPEPGSFDET KQLDSLFWAR NKALELERVD DYNRLNGPGY HSESWYKPTR FYPSGTTFWS
ETYIDPFTNE AMLTASVPMW VEHQFVGVST VDVTLLGLGH FFHQAMNDNH GYMYALDHSN
RVLAAPKKDN RNNIFDKRAF FKPFASFTAN NPVFEPINGK LIELDAKLIE ESQENPAYNQ
FQLADLMDTT HFSQREKLAA LINLNAQGKP KSTSLVASFE LGHDPILDEP TLVSIFMMPK
TFWKIVLVTP LSSMNDKANI IAARMGIYLL LMQLAALILL FMLQHKLFIR PISRMVNALQ
GNQLAKLELE ATISKDELGQ LAKAFISRSH QLEVAFASLD ASNLALEEQL TVQRIAQTEL
KLRKKQLNSL LNSSQNLISI KDIDGSYILV NDRFCEVIGI ERHSIIGTKD SQIFPAHIAE
LILKHDNITL KTQSPQSFEQ PIPSVQGEIV YQVTKFPIKD DDGTMTSIGS MAFEIGSQKI
ISQELHDKNE SLNLELAKYS HQLLMSKQEN QQLQEKANTL ELSINKLNNL QRVEVKNHEL
FPQLFATLIK QHTQEQDKLL SIICNYKTGI SQENYDEIVG LLTEHTDKLR HFQHLIVGKE
MAIKSINLSH YLSHFLVVIE PQLTEQEIQV RVVCDSKLSI NRSSWDLLLI FYSLINNCLS
HAFTRQQKIK VLSIEVELQD DNLIITVEDN GQGIADDKLA ALNSQLGSNA YSGTLPSLDA
WVRSELNGTL EVKSALNTFT RVICTLPFER
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