| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2576 |
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| Symbol | |
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| ID | 5610198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3126222 |
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| End bp | 3126956 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640933495 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474311 |
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| Protein GI | 157375711 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATGAGT TATCAAAAGA TTATCTGCAA GAAACTCCAA TGCTGGATTT CAATCACCCC
CACATACAAG ACCTGGTTGA GCAAAGGAGA TGGAAAAACT TGTCTCAATA TGATGCTATT
GGTGCCATTT ATAATTATGT ACGAGATGAG GTCCGTTTCG GCTATAACAA GGATGATCGT
TTAGCCGCCA GCCAAGTATT AAAAGATGGT TACGGGCAGT GTAATACCAA GGGGACATTA
TTAATGGCAC TGCTTCGCAG TGTAGGTGTA TCTACCCGTT TCCATGGCTT TACTATTTAT
AATGAGTTAC AGCGAGGGGC GATCCCGAAC TACCTTTTCA TGGTTGCACC AGCACGTATT
ATTCATAGCT GGGTGGAAGT TTATCAAGAT GGACGTTGGA TTAACTTAGA GGGTTATATC
TTGGATAAAG ATTACTTGAA ACAAGTTCAA ACTCATTTTG CCAACCAAAG TGAATCCTTT
TCAGGGTACG GTATTTCGAC CAAATGCTTA TCTAATCCCG ATATCGATTG GAATGGGCAA
GATACTTATA TACAGAGTGA AGGTATTGCC GATGACTTTG GTGTATTCAC TCAGCCAGAT
GAGTTCTATT CGAGACATGG CAGTAATTTG TCTGGTATAA AAAAAGTGAT GTTTCGCTAT
GTACTGCGTT ACTTAATGAA TTTTAACGTT AATAAAATTC GCACAAGCGG AATCGCAAAT
ACAAAAGCAA CTTAA
|
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| Protein sequence | MNELSKDYLQ ETPMLDFNHP HIQDLVEQRR WKNLSQYDAI GAIYNYVRDE VRFGYNKDDR
LAASQVLKDG YGQCNTKGTL LMALLRSVGV STRFHGFTIY NELQRGAIPN YLFMVAPARI
IHSWVEVYQD GRWINLEGYI LDKDYLKQVQ THFANQSESF SGYGISTKCL SNPDIDWNGQ
DTYIQSEGIA DDFGVFTQPD EFYSRHGSNL SGIKKVMFRY VLRYLMNFNV NKIRTSGIAN
TKAT
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