| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2575 |
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| Symbol | |
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| ID | 5610197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3125409 |
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| End bp | 3126152 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640933494 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474310 |
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| Protein GI | 157375710 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGCCTA ATGTTTGGGT CAAGGCAGGT ATCGTGATCA TATATGGCTC ATCTATAGAT
GCCTCCCCTC ATCGTCACCA TGCTATTCAG CTGATTTGGC CCAGTGATGG CTATGGTTGC
AATCTGGATA ACAAACAGAT ATCAGCACCG ATAATAATCG GCTCTAATGT AGAGCATCAA
TTACAAATTG ATGCAGGCTG GATCTTGTTG GTCGAACCCA GTAGTGAGTT AGGAGTCGCA
CTATCTCAAA AATTAGCAGA TCAGCCTTCA AGGGCGTTCA AATCATCTTT TTTTGCATGT
AAGCACTCTG AACAAACAGA TGACTTAACT GTACGACTTT CCCCTCTATT CGAAGAGTTA
GAACTTTCAA ATCAATTCCC TCTCAAAAAT GAAACCCAAG TAGTGGATAG TCGAATTAAG
AAGCTATTAC TTGAACTACA CCGATGCTTG GACGGTCAGT GTATCAAGCC TAATAGTTGG
CGGGCATCTG AGGTTGCCCA ATCACTCGCT CTATCAGAAA GTCGTTTTCT TCACTTATTC
AGTGAAGAAC TGGGCATCCC ATGGCGACCA TATCTGTTGT GGTGTCGAAT GATATGTGCC
GTAAGGGCGA TATTAAATGG AGACTCAGCG ACAGATGCCG CTCATCTGGC AGGGTTCTCT
GACAGCGCAC ATTTAAGCCG CACGTTTAGA AAGACTTTTG GAATGACCAT TCGCCAAGCA
AACGCTATTT TTCGAAAAGG TTAG
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| Protein sequence | MKPNVWVKAG IVIIYGSSID ASPHRHHAIQ LIWPSDGYGC NLDNKQISAP IIIGSNVEHQ
LQIDAGWILL VEPSSELGVA LSQKLADQPS RAFKSSFFAC KHSEQTDDLT VRLSPLFEEL
ELSNQFPLKN ETQVVDSRIK KLLLELHRCL DGQCIKPNSW RASEVAQSLA LSESRFLHLF
SEELGIPWRP YLLWCRMICA VRAILNGDSA TDAAHLAGFS DSAHLSRTFR KTFGMTIRQA
NAIFRKG
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