Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2562 |
Symbol | |
ID | 5609667 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3110980 |
End bp | 3111825 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640933481 |
Product | universal stress protein |
Protein accession | YP_001474297 |
Protein GI | 157375697 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.643339 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAATA TCGTCGCTTG TATAGATGGC TCAAAATTGA CTCTGGCAAC CTGCGAAGCC AGTGCTTGGG TTGCACAGAA GGTTAACGCC CCCCTTATCT TACTGCATGT ACTCGATAAA ACCACGAGAC CTGTGGTGAG TGAATTGTCA GGGCAGATAG GTTTGGGGAC TCAAGAGGAA CTCCTCAATG AGCTGGTGGA ACTCGATGAA ACCCGAAGCC GAGTCGCCCT TAAGCATGGT AAGCAATTGC TTGAAGACGC TAGGAAGTGG GCTCGCGCCA AAGGTGTCGA AGAGATCAGC AAATTGCAAC GTCATGGCAG CCTGCAAGAG AGTCTAATCG ATTTAGAAAG TGAGTTAAGG GTATTAGTGA TTGGTAAGTC GGGTGAAGAC CATAGCACCA GTAAAAACAT AGGCTCACAG CTCGAAAGTG TTATTCGCTC CATTAAAGCG CATACCTTAG TGGTCAGCGA AACGTTTGTG ACGCCTAGCT CCTACATGAT TGCCTTTGAT GGCAGTGCAA CCAGTGAGAA GCTGATTGAA AAGGCAATGA ATACGCCTTT ACTTGCCGGG CTTGAGTGTC ATTTGGTTAT GGTGGATGAA GCGGGCAATA AGAGCACGGC TTTCGATCAG GCGGCTATGC GACTTCGAGA AGCCGGGCTT AGCGTGAATG AGAATATTCT GTCCGGGCGC GTCGATGAGG CGCTGCTTAA TTACCAGCAA GAGCAGCAAC TGGACATGAT TGTGATGGGG GCTTTCGGCC ACTCAAAACT GAGACAGTTC TTTGTCGGCA GCAATACGAC CGAAGTGCTG GTTAAAAGTG CGGTTCCGCT ACTGCTGATC CGTTAA
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Protein sequence | MKNIVACIDG SKLTLATCEA SAWVAQKVNA PLILLHVLDK TTRPVVSELS GQIGLGTQEE LLNELVELDE TRSRVALKHG KQLLEDARKW ARAKGVEEIS KLQRHGSLQE SLIDLESELR VLVIGKSGED HSTSKNIGSQ LESVIRSIKA HTLVVSETFV TPSSYMIAFD GSATSEKLIE KAMNTPLLAG LECHLVMVDE AGNKSTAFDQ AAMRLREAGL SVNENILSGR VDEALLNYQQ EQQLDMIVMG AFGHSKLRQF FVGSNTTEVL VKSAVPLLLI R
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