Gene Ssed_2562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2562 
Symbol 
ID5609667 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3110980 
End bp3111825 
Gene Length846 bp 
Protein Length281 aa 
Translation table11 
GC content49% 
IMG OID640933481 
Productuniversal stress protein 
Protein accessionYP_001474297 
Protein GI157375697 
COG category[T] Signal transduction mechanisms 
COG ID[COG0589] Universal stress protein UspA and related nucleotide-binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.643339 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAATA TCGTCGCTTG TATAGATGGC TCAAAATTGA CTCTGGCAAC CTGCGAAGCC 
AGTGCTTGGG TTGCACAGAA GGTTAACGCC CCCCTTATCT TACTGCATGT ACTCGATAAA
ACCACGAGAC CTGTGGTGAG TGAATTGTCA GGGCAGATAG GTTTGGGGAC TCAAGAGGAA
CTCCTCAATG AGCTGGTGGA ACTCGATGAA ACCCGAAGCC GAGTCGCCCT TAAGCATGGT
AAGCAATTGC TTGAAGACGC TAGGAAGTGG GCTCGCGCCA AAGGTGTCGA AGAGATCAGC
AAATTGCAAC GTCATGGCAG CCTGCAAGAG AGTCTAATCG ATTTAGAAAG TGAGTTAAGG
GTATTAGTGA TTGGTAAGTC GGGTGAAGAC CATAGCACCA GTAAAAACAT AGGCTCACAG
CTCGAAAGTG TTATTCGCTC CATTAAAGCG CATACCTTAG TGGTCAGCGA AACGTTTGTG
ACGCCTAGCT CCTACATGAT TGCCTTTGAT GGCAGTGCAA CCAGTGAGAA GCTGATTGAA
AAGGCAATGA ATACGCCTTT ACTTGCCGGG CTTGAGTGTC ATTTGGTTAT GGTGGATGAA
GCGGGCAATA AGAGCACGGC TTTCGATCAG GCGGCTATGC GACTTCGAGA AGCCGGGCTT
AGCGTGAATG AGAATATTCT GTCCGGGCGC GTCGATGAGG CGCTGCTTAA TTACCAGCAA
GAGCAGCAAC TGGACATGAT TGTGATGGGG GCTTTCGGCC ACTCAAAACT GAGACAGTTC
TTTGTCGGCA GCAATACGAC CGAAGTGCTG GTTAAAAGTG CGGTTCCGCT ACTGCTGATC
CGTTAA
 
Protein sequence
MKNIVACIDG SKLTLATCEA SAWVAQKVNA PLILLHVLDK TTRPVVSELS GQIGLGTQEE 
LLNELVELDE TRSRVALKHG KQLLEDARKW ARAKGVEEIS KLQRHGSLQE SLIDLESELR
VLVIGKSGED HSTSKNIGSQ LESVIRSIKA HTLVVSETFV TPSSYMIAFD GSATSEKLIE
KAMNTPLLAG LECHLVMVDE AGNKSTAFDQ AAMRLREAGL SVNENILSGR VDEALLNYQQ
EQQLDMIVMG AFGHSKLRQF FVGSNTTEVL VKSAVPLLLI R