| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2549 |
|---|
| Symbol | |
|---|
| ID | 5609813 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3093879 |
|---|
| End bp | 3094658 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640933468 |
|---|
| Product | amino acid ABC transporter |
|---|
| Protein accession | YP_001474284 |
|---|
| Protein GI | 157375684 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTGCTCA CACTCCTCAT ACTATCCCAG CTATCGAGCA ATCAAGCCCA AGCCGAGACA
CTCACCTACC TTGTCATATC GAATCAAGCC GAGCCCTTCC AGATCGTTAA TCAAAAAGTT
AATCATACTG AACCTATGCA TCAGGGGATA ATCAGTGACA TCGTATATGC ATCTCTTAAA
GAGAGCGAAG TAGAGATCAC TACACTCGCC TACCCGTTTA AGCGATATAT CCTGATGATG
GATCCACAAC ACACACCCAG ATGGATAAGC TATGGCTCAC CGGCCTGGCA AACGATTCAC
GGCGAAGAGG CACAAAACAA ACGCCTGTCG AAAAATAAAT TGTTCGATGT CTCTCATGTG
CTTGTCACGA AAGATGATTC GGCATTCCCT GTAAACCGAG TCGATGATCT GTTTGGTAAA
ACCATCATTA CTCTCAAAGG CTTTACCTAC CCGGGACTCG ACAGATACAT CAAGGCTGGC
CTGGTGTTCA AGGTTGAGGT TAACAGCCAC GAAAACGCGC TCAAGGCGGT AGAAACCGGC
CGCGGCATAG GCTTTGTCGC CATGAAAACC CGAGCCCTCT ATACCATCAA CAGCGCTGGA
TTAAATCGCA ATGAGTTTAC CTTAGTCGAC TTTGCTAAGG TTATCGCCCC CTATCCGATA
TATCTCTCAT TCAGCGACGC CGTACCCGCA CAACTTATCG AAGAAGTGGA TCTGCAGGTG
TTAAAACTGA AACAAAGCCA TCGAATCGAT AAGATCATAC ATTCATACAT AGGTGAATAG
|
|---|
| Protein sequence | MLLTLLILSQ LSSNQAQAET LTYLVISNQA EPFQIVNQKV NHTEPMHQGI ISDIVYASLK
ESEVEITTLA YPFKRYILMM DPQHTPRWIS YGSPAWQTIH GEEAQNKRLS KNKLFDVSHV
LVTKDDSAFP VNRVDDLFGK TIITLKGFTY PGLDRYIKAG LVFKVEVNSH ENALKAVETG
RGIGFVAMKT RALYTINSAG LNRNEFTLVD FAKVIAPYPI YLSFSDAVPA QLIEEVDLQV
LKLKQSHRID KIIHSYIGE
|
|---|
| |