| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2517 |
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| Symbol | |
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| ID | 5610980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3062166 |
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| End bp | 3063167 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933436 |
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| Product | lytic murein transglycosylase |
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| Protein accession | YP_001474252 |
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| Protein GI | 157375652 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
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| TIGRFAM ID | [TIGR02283] lytic murein transglycosylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000972564 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.926391 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGTTTGGA AGAAAATAGG GGCCGCGGTT TTTATCACCC TGTTTAGTGG TTCGGTGCAA
CTCGCATCTG CACAAGACAG TCAAAAATCG CCTAGTTTCG TTGAATATTT AGATGCATTA
AAACTTGAAG CAAAAGAGCA AGGCATTGAA AACGAAATAG TGGCGCGTGT TTTTCCTAAA
ATTAAGCCGT TTAAGCGAGC TGTATTCACT GGGAAAACTC AAGCTGAACC TAAGACTTCT
CTGGAAACCT ATCTCCCTAC GACTGTGCCT GAATGGAAAG TTGAAAAGGC CAGGTCACTG
TTTAAGACTC ATAGAGCCGA GCTGGAAGCT ATCGGTAAAA AATACGGTGT CCAACCCAGA
TTTATCATTG CCCTATGGGG CATTATCGCC GATTTCGGAG CTGAGTCAGG CCATCTTCCC
CTGCTGTCTG TTTTGGCTTC CTCAGCCTAT GAGGGGAGCA AAGAGGCCTT CTTCAGAGAT
GAGTTTTTTG CTGCTTTAAA TATCATCGCT CAAGATAATA TCGACTTTGA TGACTTGCAA
GGCGCTTGGA CCGGTCACAT GGGACAAACT CATTTTACTC CAAGCCAGTA TCTCTTGTTC
GCCCGGGATG GTGATGGTGA TGGCAAGAAA GATATCTGGA ATAACACACA AGATACCTTC
GCTTCATTGG CCTATTATCT CCAGCAAGCA GGTTGGAAGA GTGACGGTAC CTGGGGGCGC
CAGGTTCTTA TACCTAAAGG GTTTGATCGC TCGCATTCGT CCCTCGAGAT AAAGAAAACC
TTCTCACAAT GGTCCGCGCT CGGCGTGACG CGTTTCGATG GCTCTAAATT GCCTTCACGG
GATGATATGC AAATTTCATT GATCATGCCC GATGGTGTCG GTGGGCGTAA ATACCTCGTT
TATGACAACT ATCGTGCCTT GCTAAAATGG AATGAATCCG ACTATTTTGC TCTTTCAGTG
ACCTATCTTT CGGAGCGGAT CAAGTATCCT GCGATAAAAT AG
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| Protein sequence | MVWKKIGAAV FITLFSGSVQ LASAQDSQKS PSFVEYLDAL KLEAKEQGIE NEIVARVFPK
IKPFKRAVFT GKTQAEPKTS LETYLPTTVP EWKVEKARSL FKTHRAELEA IGKKYGVQPR
FIIALWGIIA DFGAESGHLP LLSVLASSAY EGSKEAFFRD EFFAALNIIA QDNIDFDDLQ
GAWTGHMGQT HFTPSQYLLF ARDGDGDGKK DIWNNTQDTF ASLAYYLQQA GWKSDGTWGR
QVLIPKGFDR SHSSLEIKKT FSQWSALGVT RFDGSKLPSR DDMQISLIMP DGVGGRKYLV
YDNYRALLKW NESDYFALSV TYLSERIKYP AIK
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