| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2493 |
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| Symbol | |
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| ID | 5609895 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3033041 |
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| End bp | 3033778 |
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| Gene Length | 738 bp |
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| Protein Length | 245 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640933414 |
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| Product | OmpA/MotB domain-containing protein |
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| Protein accession | YP_001474230 |
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| Protein GI | 157375630 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00791352 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.694387 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGAAGC AGATTATCGC AGCAATGGTT GTCAGCAGTT TAACCCTTTC AAATGTCAGT
TATGCATCGG ACACAAGCGA AGAGCGTCAG CATCACGAAG AGTTGATAGG ACTCAGCTCA
GGGATTGTGC TTGGCGCCGT TGTTGCCGGT CCGGTGGGGG CAATTATTGG TGCATTTACC
GGCACCATCA TAGGTAAGTC AGTCGGTGAT GAATCTGAGC TCTACTCACA GCAAGCGCAG
CTGGCAATGC AGGAGTCAAA AATGAATCAA CTCAGCGATG AGAATCGGTC ATTGATGGCA
ATATCGAACC GATATGATTC GGCGCAACAT GAGTTAGCCC AGTTGAAAGC CGAAGATCAG
CAAAAACTCG CCGAACTCTC GTTGGGCTTG AATGTACAGT TTAAAACCGG ATCATCTGAA
CTTGTCCCTC ACTTCAAATT GCAGCTCGAT GAGGTGGCCT ATGCCATGTC ACTTTCTCCC
GAGTTAAGAC TCGATTTGAC CGGATATGCC GACAGGAGAG GGGACAGTAC CTATAACCAG
GCTTTATCTG AGCAGCGGGT TGCCGAGGTT AAAACCTATC TGGTCAATCA AGGGATAGAT
GAGAGTCGCC TGGACTTCAG GGCCTATGGG GCCAGCGCGC CGATGACGGA AGAGCAGAGC
TTCGAAAATG ACTTTTTCGA CCGAAGAGTG ACCGTCAAGC TGCTATCGAC AGGGTCTGCA
CTGACTGCCA ACAATTAG
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| Protein sequence | MKKQIIAAMV VSSLTLSNVS YASDTSEERQ HHEELIGLSS GIVLGAVVAG PVGAIIGAFT
GTIIGKSVGD ESELYSQQAQ LAMQESKMNQ LSDENRSLMA ISNRYDSAQH ELAQLKAEDQ
QKLAELSLGL NVQFKTGSSE LVPHFKLQLD EVAYAMSLSP ELRLDLTGYA DRRGDSTYNQ
ALSEQRVAEV KTYLVNQGID ESRLDFRAYG ASAPMTEEQS FENDFFDRRV TVKLLSTGSA
LTANN
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