| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2491 |
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| Symbol | |
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| ID | 5611357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3030082 |
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| End bp | 3030702 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933412 |
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| Product | sortase family protein |
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| Protein accession | YP_001474228 |
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| Protein GI | 157375628 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
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| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0534452 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.504186 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGATTCT CAGGAGTTTT ACACTTAGTA GTCATCGTTA CTCTGTTAGT CGTCAGTACG
AGCCTGATTG GCAAGGGGGT CTATATGCAA GCTAAGGCAC ATTTCGCCCA GTATCTGATC
ATGCAGGCAT GGGAGCAGAC GCTCAAAGAC AGGCAAGTTC ATAAACCCTG GAGCTGGGCC
GATACCTACC CAGTCTCTAA GTTAACCTTT TTACCGGTTG CTAATGATTC AGTCATAGAT
TCAAGCCTGG ATAGCTCACT CTATGTACTC GCAGGTGCGT CGGGCAGAAA TTTGGCCTTT
GGGCCCGCGG AACTGAACCT TAACTCCCAT GAAATCGGTG GTAGCCATAG TGGTAATCGA
GTGATTGCTG GCCATAACGA TACCCACTTT GCGATTTTAA ATGGAGTAAA TAAGGGGCGT
TTAATTCAAC TGCAAGATGC AACCGGCAAG AAGGTAGTGT ACCGGGTGAC GGGCAGAGCC
ATTGTTCATG AGTCAGATAC CCGGGTGCTT GCACCATCTG ATGACAGGCT GCTTACCCTA
ATCACCTGTT ACCCGTTTAA TTCAGTTGAG GCGGGTGGAG AGCTGCGTCT GGTTGTGAAA
GCCGAGGCGA TAGCCAGATA A
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| Protein sequence | MRFSGVLHLV VIVTLLVVST SLIGKGVYMQ AKAHFAQYLI MQAWEQTLKD RQVHKPWSWA
DTYPVSKLTF LPVANDSVID SSLDSSLYVL AGASGRNLAF GPAELNLNSH EIGGSHSGNR
VIAGHNDTHF AILNGVNKGR LIQLQDATGK KVVYRVTGRA IVHESDTRVL APSDDRLLTL
ITCYPFNSVE AGGELRLVVK AEAIAR
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