| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2490 |
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| Symbol | |
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| ID | 5611356 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3028976 |
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| End bp | 3030001 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933411 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001474227 |
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| Protein GI | 157375627 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.316308 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.521612 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAAAG AATTAATGCA GCAAGCGGCC CGGAACCTAA AGAAAGCCGT TCCATTGATG
CTAAAACATC AAATACCGAC CACTCCAACA AACTACGCGC TCTGGTACGC CTATGTTGGT
GAGCAGACTC CCGCATTAAA CAAGCAGCTC GATATCATAG TTGAACAATA CCAAACCTGC
CCTCCAGTAA ACTCTGAACT GCTTTACCGC GAGTTTGTTT CCGATCCGGT GGAGCTCGAC
GTCATCGATA TGCGCCAAAA CCTGGAGGCG ATGGCAACTG AACTGTCTCA ATCCTTGAAA
GATACCAACC TCGACGCCAC ACAATTTCAG ACCCGAATCG ACAGCAACTT TGACAAGCTG
AACCGAATCG AAGAGGAAGG CGTGAGTCTC GAGAAGGTGC TTGGACTTGT CCGTAATCTG
GTTAAAGAAT CTGATGATAT CCGTTCCAGC ACCGAGTTTT TTACAGGCCA GCTCAGCAAG
GCTCAACAGG AAATTGAAGC GTTAAAGTTA CAACTTAAGC AATCCGAAAA AGATGTACTG
TTTGATGCCT TGACCGGCAT TCTCAATCGC CGGGCATTCG ATGATGACTT CAAAGGGATC
CTCAATCAGA GTCCTGACGG AACATGCTTA ATATTGGTAG ATATCGACCA TTTCAAAGCA
TTTAACGACA ATTACGGACA CCAGCTGGGA GATCAGGTAC TCAAGGCTGT GGCCAAACGA
CTCTCTGAAG CGTGTCGGGA CGGTGTAAAA ATCTATCGCT ATGGCGGTGA AGAGTTTGCA
GTGTTACTCC CCAACAATCA ACTTAGAACC GCCAGACACC TCGCAGAAGC CATGCGTCGA
AGTCTGGAAA AAGTGTCGCT AAAGGATAGG CGCAAAGATA CCAGAATAAA TAATATCACC
GCCTCATTTG GTGTGGCTCA ATGGCAGCCA TCTATGACTC ATGCACAGCT TATTGAACAA
GCAGATAAAC TCCTCTATGA AGCCAAACGT TTAGGTCGAA ATCGAGTCAT GCCCATCTCA
AGTTAA
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| Protein sequence | MTKELMQQAA RNLKKAVPLM LKHQIPTTPT NYALWYAYVG EQTPALNKQL DIIVEQYQTC
PPVNSELLYR EFVSDPVELD VIDMRQNLEA MATELSQSLK DTNLDATQFQ TRIDSNFDKL
NRIEEEGVSL EKVLGLVRNL VKESDDIRSS TEFFTGQLSK AQQEIEALKL QLKQSEKDVL
FDALTGILNR RAFDDDFKGI LNQSPDGTCL ILVDIDHFKA FNDNYGHQLG DQVLKAVAKR
LSEACRDGVK IYRYGGEEFA VLLPNNQLRT ARHLAEAMRR SLEKVSLKDR RKDTRINNIT
ASFGVAQWQP SMTHAQLIEQ ADKLLYEAKR LGRNRVMPIS S
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