| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2425 |
|---|
| Symbol | |
|---|
| ID | 5613932 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2946388 |
|---|
| End bp | 2946624 |
|---|
| Gene Length | 237 bp |
|---|
| Protein Length | 78 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640933336 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001474162 |
|---|
| Protein GI | 157375562 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000000867114 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGATC TTGAAACCTG GCTCATCATC ATCTTAGTGA TTGGTGTGAT TGCAAGTAAC
CTTGCAGTCT TGAAATACAG TACCAAATAT AAGATGCCTC AATTTGGCAA GGACCATAAA
GTTAAGCCAA AATCTAAACT TAAAGATGAG GCCAATAAAG CTGAAAAGCT CAGCGAAAAC
AACTCTGACA AAGACGCAGA TCTTGCCTCA TCAGACAAGC ACAATACTGA CAACTAG
|
|---|
| Protein sequence | MSDLETWLII ILVIGVIASN LAVLKYSTKY KMPQFGKDHK VKPKSKLKDE ANKAEKLSEN
NSDKDADLAS SDKHNTDN
|
|---|
| |