| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2404 |
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| Symbol | |
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| ID | 5613010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2923404 |
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| End bp | 2924321 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640933315 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001474141 |
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| Protein GI | 157375541 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.772401 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.186962 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCGTC TTCCTCCACT AAACCCCCTA AGGGCATTTG AATCTGCAGC CAGACACGAG
CATTTCTCTC GTGCTGCCGA TGAGCTGTGT GTCACTAACA GCGCCATTAG CCATCAAGTG
AGGACATTAG AGGAGGCGTT AGGGATCACG CTATTTGAGA AACAAGGGCG TAATGCCAAA
CTGACGCAAT CAGGTAAAAA TTTATTGCCA GCGATACAGG AAGCCTTCGA TATCATAGGT
GAGGCGTGCG AGAAAGCAGT CAAACCCGGG GTGACCGGCC GATTGATTAT CTCAGCTCCA
CCAGAACTCT CATCCAAATG GCTGATTAAG CAGATAGGTG ATTTTGCCGA CCGTTACCCT
TCAATCGATG TCAGTTTACT CGAACACGCC AGCGATGAGC AGAACATCAA CCCGGAAGCC
GATCTGAGTA TCATCTATGG GGCCGGAGAT GGAGACTGGA ATCGTTATTG GGTAACCCCA
CTGCATCCTA TTCAATTTTT CCCGGTATGT AGCCCACAAC ACTTAGAGAA GAACAATTCT
CTCTCTCAGC CACTCGATTT GGCACACCAA CGACTGTTAC ACGATGATCA GGATGGTAAA
ACCTGGGCCA CCTGGCTAGG CGCCCACGCT CCACAAATTA TCAATATTCC TCAACACCTC
AACTTCTCAC ATGCAGGACT CTCTCTGGAG GCTGCCATCG CAGGCTACGG CGTAGCCATA
GGCGACAACT ACACCGCCTC AGCAGGCCTG GCCAGCGGAA ACTTAGTACG CCCTTTCGAA
CAAAGTGTCC CCTCCCTTGG CAATTATTAT CTGGTTGCCG AAAAGCGAAA GACCGGTGAC
GATAAACTCA GCGCTTTTAT CGACTGGTTA CTGACACGGA TAAATGCCCA GTTCATCGAC
ACGCCCCAAG CGCTATAA
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| Protein sequence | MRRLPPLNPL RAFESAARHE HFSRAADELC VTNSAISHQV RTLEEALGIT LFEKQGRNAK
LTQSGKNLLP AIQEAFDIIG EACEKAVKPG VTGRLIISAP PELSSKWLIK QIGDFADRYP
SIDVSLLEHA SDEQNINPEA DLSIIYGAGD GDWNRYWVTP LHPIQFFPVC SPQHLEKNNS
LSQPLDLAHQ RLLHDDQDGK TWATWLGAHA PQIINIPQHL NFSHAGLSLE AAIAGYGVAI
GDNYTASAGL ASGNLVRPFE QSVPSLGNYY LVAEKRKTGD DKLSAFIDWL LTRINAQFID
TPQAL
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