| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2391 |
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| Symbol | |
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| ID | 5612577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2911328 |
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| End bp | 2912716 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640933302 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001474128 |
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| Protein GI | 157375528 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.914149 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATTTT CTACACTCGG ATTAAGCGCT CCTATCTTAA ATGCTATTAG CGAACTGGGC
TATCTGACGC CTACGCCTAT TCAGGCTGAA GCCATTCCGC TGGCGCTTAA AGGCAAAAAC
CTAATTGCTG CTGCGCAAAC GGGTAGTGGT AAGACAGCCA CTTTTGTGTT GCCAATCCTT
GAGATGTTGG CCCGTAGTGA AACGCAACGT AAAAAACGTG CTCGTGCGCT TATACTTACA
CCGACCAGAG AACTCGCGGT GCAGGTTTGT AAGAGCATTG AGGTGTACGG TAAAAATCTT
AATCTTAAAT CCATAGCCAT CTATGGTGGT GTCGATTATG CGCCGCAAAA ACAGGCGTTA
ATTGATGGTG TCGACATCGT TGTTGCAACA CCTGGCCGTC TACGGGACTT GTATACCCAG
CGCGCGATCC ACTTCGATGA GATTGAGATG TTAGTGCTCG ATGAAGCTGA CAGAATGCTG
GATATGGGTT TTATCGAAGA TATCACTAAG ATTATCGATA CACTGCCTGA AGAGAGACAA
AATTTACTGT TTTCAGCCAC ACTTTCCAGA CAGGTAAGAG AACTGGCTAA AGACACGGTT
TCCAATGCGA TCCAGCTCTC CTTTAATAAA GAGCGTGCAG GTAAGCCAAA TATTGACCAG
TGGCTCATTA CTGTTGATAA AGATAAGAAG TCGGCGCTGT TAAGCCACCT AATCAATGAA
AATAACTGGC AGCAGGCACT CATTTTTATC GAAACCAAAC ATGGTGCCGG TAAATTAGTG
AGCCAGCTTG AGAAGCGTGG CATTGAGGCT GAATGTATTC ACAGCGGTCG TACACAGGCC
ATTCGTGAGA AAATATTAGC CGACTTTAAA ACAGGTAAGA TCAAGTATTT AATTTCGACT
GGAGTATCTG CACGCGGTAT CGACATCGAC GTACTACCGC TGGTGATCAA CTATGATCTG
CCTTTCCCTG CCGACGAATA CGTACATCGT ATTGGCCGTA CGGGACGTGC GGGTGCTGCG
GGTGAAGCTA TCTCTTTGGT GTCGAAAGAC GATTTTAAAA ATCTGTGCAT GATTGAAAGG
CGTCTAGATC ATTTGATTGA AAGAAAGGTG GTTGAAGGTT TTGAGCCGCG TAAAGTAGTG
CCGGTTTCTG TTTTGAACTT CGAGCCTAAA AATAAGCCTG TTAGAGATGC TGCGTCTAAA
GAGGAGCGCG GACACTCTAA ATCATCAAAG CCTGCTTATT CTAAGCGTGA CTCTTCAAAA
TCAAATTCTT CAAAAAGTAG GTCTTTAAAA GATAGCTCTT CAAAAAATCG GTCTTCAAGC
AATAATCGTT CAGATAACAA AGAAAGCTCA GCAGATAACA AGCTTCCGCT TAACCCTTGG
AACCGTTAG
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| Protein sequence | MSFSTLGLSA PILNAISELG YLTPTPIQAE AIPLALKGKN LIAAAQTGSG KTATFVLPIL
EMLARSETQR KKRARALILT PTRELAVQVC KSIEVYGKNL NLKSIAIYGG VDYAPQKQAL
IDGVDIVVAT PGRLRDLYTQ RAIHFDEIEM LVLDEADRML DMGFIEDITK IIDTLPEERQ
NLLFSATLSR QVRELAKDTV SNAIQLSFNK ERAGKPNIDQ WLITVDKDKK SALLSHLINE
NNWQQALIFI ETKHGAGKLV SQLEKRGIEA ECIHSGRTQA IREKILADFK TGKIKYLIST
GVSARGIDID VLPLVINYDL PFPADEYVHR IGRTGRAGAA GEAISLVSKD DFKNLCMIER
RLDHLIERKV VEGFEPRKVV PVSVLNFEPK NKPVRDAASK EERGHSKSSK PAYSKRDSSK
SNSSKSRSLK DSSSKNRSSS NNRSDNKESS ADNKLPLNPW NR
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