| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2380 |
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| Symbol | |
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| ID | 5612250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2894861 |
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| End bp | 2896102 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640933291 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001474117 |
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| Protein GI | 157375517 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0242852 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACTTT ACAATTTATT TAGAAGTTCA CTCTTCCAAA TTGGATTCCC GTTAGCCCTA
GCTATTCAAC TGTGTCTATC ACAGGAACAG ATATTTACTC TGCTGGCCTC TTATCATGAG
TTGGTTAATG TCGTTCCCTA TATACTATTT GCACTGGTTA TTCTCTTGAG TCAGCCATTC
AACCAGGGCA GTACAGGTTT AGTTTCACTA TTAATGATAC TCAGTTACTA TGTAATCCAA
AATTCGTTGA TCGTGCCGCT GGAAGATATG AACAGAGTCA TATTTGTATT ATTAGCGACT
CTATTACCGA TAAACTTACT TTTAATCCAT GCTTTACCGG ATAAGCGAAT ACTCTCCAGG
TTTGGGATCA CTTTTTCACT TTTTATCCTG TTACAGCTAG TCTGGTTATC TATTCTAATG
CAAAATCTAT CGGCAACTGA TGTTAACTGG TTGTGGCAAT CATTTCTAAA ACCATTACCA
ACATTATCAC CTTCCCCCTT AATTATCATA TTATTATCTT TCTTTATAAC GATTTTCAGC
GCCCTGATAC TCTTATTCAG AGGTCACAAC TCAGATCAAG CTGTCTATAT CACTCTGCTA
TTTACAAGCG TTATGTTTTT ATCATTTAAT CAAGCCCTGA TGCCTGCCTT GACCGCCTCA
ATGGCTGCAA TACTATTACT AATATCGATT ATTAATTCGA GCCACGAACT TGCTTTTATT
GATCAATTAA CAGAGGTACC GGGGCGACGC TCCCTCGAAA TTGAGATAAA GCATCTATCC
GGCTTATACA CTATAGCCAT GATAGATATC GATCACTTCA AACATTTCAA TGACACATTT
GGCCACAGAA CAGGAGATGA AGTACTGCGT TTGGTCGCAC AATTAATGAA TCAAAATAAG
GGAAGGGGTA GGATTTTTCG CTACGGCGGT GAGGAGTTCA CCATTATATT CAAGGGCAAA
AATGCTAATC AATGTATGCC ATACCTCAAT AGCCTAAGAA CCAGAGTCGC AGAATATGAC
CTTAAGATCC GCGACCACAC CTCTCGTCCG GTAATGGGCG TAGGTCTCAA AGCTGAAATG
GAAAAAGCCA ATAATGAATC TGTAAATATC ACCATCAGCA TAGGTGTAGC GGATAGCGTC
TCGGAAACCA TACCGGAAAA TGTTATGAAA GCGGCTGACA AAGCATTATA TCGAGCTAAG
AACGGTGGTC GAAACAGAGT AACAAACTTG AGATTTGCTT AG
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| Protein sequence | MSLYNLFRSS LFQIGFPLAL AIQLCLSQEQ IFTLLASYHE LVNVVPYILF ALVILLSQPF
NQGSTGLVSL LMILSYYVIQ NSLIVPLEDM NRVIFVLLAT LLPINLLLIH ALPDKRILSR
FGITFSLFIL LQLVWLSILM QNLSATDVNW LWQSFLKPLP TLSPSPLIII LLSFFITIFS
ALILLFRGHN SDQAVYITLL FTSVMFLSFN QALMPALTAS MAAILLLISI INSSHELAFI
DQLTEVPGRR SLEIEIKHLS GLYTIAMIDI DHFKHFNDTF GHRTGDEVLR LVAQLMNQNK
GRGRIFRYGG EEFTIIFKGK NANQCMPYLN SLRTRVAEYD LKIRDHTSRP VMGVGLKAEM
EKANNESVNI TISIGVADSV SETIPENVMK AADKALYRAK NGGRNRVTNL RFA
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