| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2379 |
|---|
| Symbol | |
|---|
| ID | 5612184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2892574 |
|---|
| End bp | 2894649 |
|---|
| Gene Length | 2076 bp |
|---|
| Protein Length | 691 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640933290 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001474116 |
|---|
| Protein GI | 157375516 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3119] Arylsulfatase A and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0467507 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGATA GTACACCTGA AGGGTCAGGC GAGGTATCTA TGCTGAGAAC ATTCTGGCGA
ACTAACGCCT TGATGTTACT TTCATTGGTC TTACTCAATA ACTTCAGGCA ACTTCTGCAA
TTCAACTCTT CATTTTCAAT CTCTACAACT ATGACTCATG TAAGTAAATC TGACCTCCTA
AGTCATGGAT TACTTATTGA TTTATCGCAG TTTATTATTT TAGTAATACT CCTTCACTTT
ATCTGGTCTC TCATCATAAC CATTTCTTGT AAACATTGGT TTAGATTAAC TCAACATGAA
GGGATCAGAA CTCAAATCTG GCTCATTATC ACCTTGTCTC ATATCACTTT TGTATTAGCC
GCTAATGCTT ACCTGTTTCC AACTTCTGTA CTGGGTTTTC TAAGAGATAC TCCTTTAGCT
TCCCCCTTAG GTTTAACTGT CCTTGGCTGT TTACTCATGA GTCAATTTTT ATGGGGGCTC
TACAACTATA TCGGCAGAGT CGCCACCATT AGCCTCGTTG TAACTACTTT TACACTAGGC
TTTATCTCGA CAATTAATGT TGCTGAGCCA TATGAACCTA CAGATAAGAC AAATCCAAAT
GTGTTTATTA TTGGCATAGA TGCTCTGAGA CCGGATCACC TGGGTTATCG AAACCCGGAT
AATCACTTCA CCCCTAATAT TGACAAATTT CTTTCCCGTG CAAGTATTTT TGATGAAACA
TATACTCCTC AAGGTAGAAC CTATGTTGCG TGGATGAGCT TACTTTCGGG GCAATACCCG
ATAAATCATG GTGCAAGGTT TAATTTAGCG CCACCCGAGC TGGTGCAAAC AGAGTTCCCC
TTAGTCAGAG AGTTGAAACA GCAAGGTTAC ATGACAACCT ATGCAATGGA TGAGAGACGT
TTCAATCAAA TAGATGAAAA GTATGGTTTC GAACAGGTTA TAGGACCTAA AATTGGAGCC
GCCGATGCCA TAATTACTAA TATTGCAGAT ATCCCTTTAA TTAACCTCTT TATCAAGCTT
CCCCTCTCAG AGGTATTGTT CCCGTACCTT TATATGAACC GTGCCTACGG AAAGGGCTAT
GATCCAATAT TGTTTAACCA AACTGTGAGC GGTAGTTTAT CAACCAGTCA GCCAAATTTT
TTAGCAGTTC ACTTTTGTCA ACTGCACTGG CCATATACCT CAAAAGACTT TATCGATATG
GATAGCGCCA AATGGAAAGG CAATTATAAC CATTTTATGT ACCAAGCCTT ACTATCTAAG
GTAGATGAGC AATTTCATCA TTTTATGGAT GACCTCAAGA ATCGTGGTTT CTTAGAAAAT
GCCATTGTTT ATCTGATATC AGATCATGGT GAAGGGTTCA TGTTAGGACA AGACACCCTA
CAAAAAACTG ACAATAATAT TGGTAAATTA AATGTCAATG CATGGGGTCA TGGCACTAAT
ATTCTCAGCC AGGAACAGTC AAACGTACTC ATGGCATATA GAAAATTTCC CCCGGGGTCT
CAATCTAAGC CTCAAATGGT ATCTGGTATT TTTTCACTAA TCGACATCGC CCCGAGTTTG
TTTAGCGAAC TTAATTTAAG TTTAGAAGGT TCAGATAAAA TCTTTGATGG CATTGTACTT
CCAAAGGACA GGGTATCAAA AATTACCGAT ATAACTGAAA GGGAGGTGTT CGTGGAATCA
TCTCGGCCTG TAAAATCGAT CAACGCGAGT TTCATCGATG ATAAAAAAGT CCTATCTGAA
ACCGCGTCAA AATATGAAGT CAGAGACAAT GGGCGAATAG TCATGTTACC GCAATTTCAC
AATAAATTAA TAGGTGAGAA GCAACGATCT ATCTATTATA AACACTGGCA ACTTGCCATG
TTACCGGATT TTGAAGAACT GATTCTGGTT GATACAAAAA TGAAAACCTG GAGTTTAATA
ACTAACTACC AGGGTACAGC TCCTTGGCAA AAAATGCTGA CGAGTTTGTG TGAACACTAC
CGAGACGATC AGGGCTTTGA CCCTAATGAT AAATGCTCAA ACAAAATAGT AAACTCACAA
CCATTGCTAC CTAGCAGTAA CAAGTCCTTT GATTAA
|
|---|
| Protein sequence | MMDSTPEGSG EVSMLRTFWR TNALMLLSLV LLNNFRQLLQ FNSSFSISTT MTHVSKSDLL
SHGLLIDLSQ FIILVILLHF IWSLIITISC KHWFRLTQHE GIRTQIWLII TLSHITFVLA
ANAYLFPTSV LGFLRDTPLA SPLGLTVLGC LLMSQFLWGL YNYIGRVATI SLVVTTFTLG
FISTINVAEP YEPTDKTNPN VFIIGIDALR PDHLGYRNPD NHFTPNIDKF LSRASIFDET
YTPQGRTYVA WMSLLSGQYP INHGARFNLA PPELVQTEFP LVRELKQQGY MTTYAMDERR
FNQIDEKYGF EQVIGPKIGA ADAIITNIAD IPLINLFIKL PLSEVLFPYL YMNRAYGKGY
DPILFNQTVS GSLSTSQPNF LAVHFCQLHW PYTSKDFIDM DSAKWKGNYN HFMYQALLSK
VDEQFHHFMD DLKNRGFLEN AIVYLISDHG EGFMLGQDTL QKTDNNIGKL NVNAWGHGTN
ILSQEQSNVL MAYRKFPPGS QSKPQMVSGI FSLIDIAPSL FSELNLSLEG SDKIFDGIVL
PKDRVSKITD ITEREVFVES SRPVKSINAS FIDDKKVLSE TASKYEVRDN GRIVMLPQFH
NKLIGEKQRS IYYKHWQLAM LPDFEELILV DTKMKTWSLI TNYQGTAPWQ KMLTSLCEHY
RDDQGFDPND KCSNKIVNSQ PLLPSSNKSF D
|
|---|
| |