| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2374 |
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| Symbol | |
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| ID | 5611426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2888526 |
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| End bp | 2889101 |
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| Gene Length | 576 bp |
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| Protein Length | 191 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933285 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474111 |
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| Protein GI | 157375511 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4960] Flp pilus assembly protein, protease CpaA |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCCGAAA CTCAACTTAC AATTCAGTTG ACCCTTGCTG GAGTGTTTTT TATTACTGCT
ATAAGTGTAG ATCTCTATAA AGAAAAAATA CCTAACAAGC TGAGCCTGCT GGCGATCTTT
TGTGGATTTG CGATTAATGC TTACTATGCC CAGTTAGCCG GGGTGTTAAT GGCGTGTTTT
GGTTTTGGTT TAGCTTTCAT ATTACTGTTT CCAACCTTTA TATTTAGGAT ACTTGGAGCG
GGTGATATTA AGCTTATGAT GGGAATCGGC GCCCTTATGG GTCCAGATCT ACTATTTTCA
AGCTTAGTTT ATGGCATAGT TGCAGGTGCT GGAACTAGTT TGATATTAAT CACTTGGAAA
GCTGGATTCA GAGGACTATT CAAAACAGTT AAGCGCTATT GGGATTGTTT CTACTTGCGC
ACATACTTCA AACCTGAGTC TGATGAAGCT GCCGGGCAAA GAGTACCCTA TGCGCCGGCA
CTCGCCATTG GCTGGTTATG GGCATGCTCT CTCGATAAAG ATATCGTAGC GCTCTATCAA
AACTGGTCTC TATACCTTGG GTTAGGGGTC ACCTGA
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| Protein sequence | MSETQLTIQL TLAGVFFITA ISVDLYKEKI PNKLSLLAIF CGFAINAYYA QLAGVLMACF
GFGLAFILLF PTFIFRILGA GDIKLMMGIG ALMGPDLLFS SLVYGIVAGA GTSLILITWK
AGFRGLFKTV KRYWDCFYLR TYFKPESDEA AGQRVPYAPA LAIGWLWACS LDKDIVALYQ
NWSLYLGLGV T
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