| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2343 |
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| Symbol | |
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| ID | 5610357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2848787 |
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| End bp | 2850820 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933254 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474080 |
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| Protein GI | 157375480 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3408] Glycogen debranching enzyme |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.266376 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000338267 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCGCCTAC CACTCTTGCT TGCATCTTGT CTGTTTGTCC CTTTGATACC ATTATCCACT
CAAACAGCGA ACGCTGAAAC GGCGGTAAAG CTAACTGCTT CGGTCGACAG CCTGGCTAAT
ACGTTAACCG ATCGCTGGAC TCTGTCCGAT ACCGGTATCG CGTGGCGGGT GAAGGACCAA
CATGAAGATC ATCTGGAATT CAGTGGTGAA CAGGTCTCAG GCATTATCTA TTATGGCAGT
GATGAGAAGG AAAACCTGTC ACTTCAACGC AAAATTGTTT GGCCAATGCT GCGCACTATC
CCCAATGATA CCCATGCCAG TTTAATTCAT GATTTTCCGC TTTCCGTTTC GCCTATGATA
ACGGTTAATG GAAAGGCCAC CAATCAGGAA CGAGTGAGAG GTATTCAATT TGATGGTGTG
CTAACCATTA CGAGCAAGAT CGATGACAAT GTGAGGCTGT CGCGAACACT TGCGCCCAGT
CCGACTGCGC CGATCATAGT GGAGCGATTC ACTATTACAA ACATGGGCAC TGAACAGGTT
TATGTAGGTA TTTCAGCATT AGACTATAGG GTGAAAACAC CGGAAAAAGA GGGTGTTTAC
GGTGCATATA TCATTACTGC CCGTAACGAC AGAACAGGTA TGTTTAAACT CGCCGTCGGG
GAGTCGGTAA CCAGTTTCGT TCAATTTAAG GCGACGAAAC AGGGTCAGCA AGCAGGCTAT
AACTCTTCTG ACGAACTTGT AGCTCGACAA GCCTATGTCA GCAGTTTGAA AAATGATCTG
CAGCTGGAAA CCCCGGATCC TGTATTAAAT AAGATGTTTG ACTTTGCTAA GTTACGTTCG
GCCGAGAGTA TCTTTCGTAC CAAAGGTGGT CTTATGCATG CGCCGGGTGG GGGACGTTAT
TATGCCGCCA TCTGGGCCAA CGACCAGGCC GAATATATCG ATCCTTTCTT TCCTTTTCTC
GGCAATAAAA CCGGTAACGA ATCGGCCATT AACAGTTTCC GGCATTTCGC CCGTTATATG
AACGATGACT TTAATCCAAT TCCATCATCA ATTATTGCCG AGGGGGATGA CATATGGAAT
GGCGCTGGTG ACAGGGGAGA TTGCGCAATG ATCGCCTACG GTGCGAGCCG ATTTGCGCTG
GCTTACGGTG ACAGGGATCA GGCCAAGCAG TTACTGCCCC TAATCGATTG GTGTCTCGAC
TTTAGCTTCA CAAAAATGTC CGAGCTTGGC ATTATCGCAT CCGATAGCGA TGAGCTTGAG
GGGCGTTTCC CGGCCGGTGA GTTTAATTTG AGTACAAATA TGCTGACCTA TGGTGCGCTT
ATCTCCTCGG TTCACCTTAA CCAAGAGCTG GGACGGGAAG CGGTTGCCCG AAGATATCAA
AAGCAGGCTG AGAAATTACT TCACTCTATC GAGAGTTATT TCGGCGCTAA GGTTCAGGGT
TACGACACCT ATCGCTACTA TGAAGGAAAC GACAAGTTAA GGGCCTGGAT CGCGCTGCCG
TTGACCATGG GGATATTCGA TCGTAAGCAG GGGACCTTAG ATGCCTTGTT ATCGCCTCTG
CTATGGAGCG CTGATGGCAT CTACAGTGAG GCGGGCAATG AAACATTTTG GGACAGGGCG
ACCCTCTACG CATTCAGAGG AATATTCAGT GCTGCTGAGA CTGATACCGC GATGCGTTAC
TTCAAATACT ATTCCCGCAA GCGCCTTCTG GGTGAGCATG TTCCCTATGC GGTAGAGGCT
TGGCCGGAGG GGAGCCAGAG GCACCTATCG GCCGAGAGCG CGCTCTATGC ACGTGTCGTT
ACCGAAGGGG TATTTGGTAT CGAGCCGACG GGATTCAAGC GTTTTAACTT AGCGCCTTAT
CTGCCAACCA CCTGGAATGT GATGTGCCTC AACCATATTC GTGCATTCGC TAATGACTTC
AATGTCTGTG TCGAGCGAAA AACGACTGAC TTTGAAGTCA GAATTACAAC GGCTGAGGGC
AAGGTTCAAA CCATTTACTG GGCGGGTGAT AAGCCATTCA GCGTCAGTTT GTAA
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| Protein sequence | MRLPLLLASC LFVPLIPLST QTANAETAVK LTASVDSLAN TLTDRWTLSD TGIAWRVKDQ
HEDHLEFSGE QVSGIIYYGS DEKENLSLQR KIVWPMLRTI PNDTHASLIH DFPLSVSPMI
TVNGKATNQE RVRGIQFDGV LTITSKIDDN VRLSRTLAPS PTAPIIVERF TITNMGTEQV
YVGISALDYR VKTPEKEGVY GAYIITARND RTGMFKLAVG ESVTSFVQFK ATKQGQQAGY
NSSDELVARQ AYVSSLKNDL QLETPDPVLN KMFDFAKLRS AESIFRTKGG LMHAPGGGRY
YAAIWANDQA EYIDPFFPFL GNKTGNESAI NSFRHFARYM NDDFNPIPSS IIAEGDDIWN
GAGDRGDCAM IAYGASRFAL AYGDRDQAKQ LLPLIDWCLD FSFTKMSELG IIASDSDELE
GRFPAGEFNL STNMLTYGAL ISSVHLNQEL GREAVARRYQ KQAEKLLHSI ESYFGAKVQG
YDTYRYYEGN DKLRAWIALP LTMGIFDRKQ GTLDALLSPL LWSADGIYSE AGNETFWDRA
TLYAFRGIFS AAETDTAMRY FKYYSRKRLL GEHVPYAVEA WPEGSQRHLS AESALYARVV
TEGVFGIEPT GFKRFNLAPY LPTTWNVMCL NHIRAFANDF NVCVERKTTD FEVRITTAEG
KVQTIYWAGD KPFSVSL
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