| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2328 |
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| Symbol | |
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| ID | 5611257 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2826099 |
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| End bp | 2827076 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933239 |
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| Product | transketolase, central region |
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| Protein accession | YP_001474065 |
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| Protein GI | 157375465 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00282331 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGGCAAAAA TTAATATGTT ACAAGCCATC AATGACGCGC TTTCACTTGT ATTGGAGACT
GACGATAAGG CCATTTTGTT TGGTGAAGAT GTCGGACATT TCGGTGGAGT ATTTCGTGCG
ACTTCCGGTC TGCAGGAAAA ATACGGAAAA GAGCGTTGCT TCAATACCCC ATTGACTGAG
CAGGGGATCG CCGGTTTCGC AAATGGATTA GCCTCTAACG GAATGACGGC GATAGCCGAG
ATTCAGTTTG CCGATTATAT TTTTCCGGCC ATCGATCAAA TTGTGAATGA ATCGGCTAAA
TTCAGGTATC GCAGTGGTAA TGAATTTAAT GTGGGTGGCA TTACCTACCG TACACCTTAC
GGTGGCGGTA TAGCCGGCGG CCATTATCAT TCTCAGTCTC CGGAAGCTTA TTTTACCCAA
ACTGCGGGTT TAAAAGTCGT GGTTCCGCGT AATGCCTATC AGGCTAAAGG CTTATTACTC
GCCTCTATCC GAGATAAAAA CCCGGTTGTT TTTTTTGAGC CTAAGCGTCT CTATCGCGCC
AACATTGGGG AAGTGCCCGA TGGCGATTAT GAAATTGAGC TAGGCAAGGC AGAAGTCGTC
CGCGAAGGTA AAGATATCAC TCTGCTCGCG TGGGGGGCCC AGATGGAGAT CATCGAAGAG
GCGGCCGATA TGGCGACAAA GCAGGGGATA TCCTGTGAAG TTATCGATCT GAGAACCTTG
GCACCTTGGG ATATAGAAAC CGTAGCAGCC TCTGTTAAGA AGACTGGTCG ACTGCTGATC
AATCACGAAG CACCATTAAC GGGTGGCTTT GCCGGAGAGA TCGCAGCCAC GATACAGGAG
GAGTGTTTTC TCTATCTTGA ATCGCCAATC AGTCGTGTTT GTGGTTTGGA TACCCCGTAT
CCATTGATCC ATGAGAAAGA ATATATGCCA GATGCGCTGA AGACGTTTGA AGCGATTAAA
GCAACGGTCA AATTTTAG
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| Protein sequence | MAKINMLQAI NDALSLVLET DDKAILFGED VGHFGGVFRA TSGLQEKYGK ERCFNTPLTE
QGIAGFANGL ASNGMTAIAE IQFADYIFPA IDQIVNESAK FRYRSGNEFN VGGITYRTPY
GGGIAGGHYH SQSPEAYFTQ TAGLKVVVPR NAYQAKGLLL ASIRDKNPVV FFEPKRLYRA
NIGEVPDGDY EIELGKAEVV REGKDITLLA WGAQMEIIEE AADMATKQGI SCEVIDLRTL
APWDIETVAA SVKKTGRLLI NHEAPLTGGF AGEIAATIQE ECFLYLESPI SRVCGLDTPY
PLIHEKEYMP DALKTFEAIK ATVKF
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