| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2322 |
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| Symbol | |
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| ID | 5611225 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2817115 |
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| End bp | 2817831 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933233 |
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| Product | DNA polymerase III subunit epsilon |
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| Protein accession | YP_001474059 |
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| Protein GI | 157375459 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
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| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0721155 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.012289 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGTAATT TCAGTAATCA AGAGGTCTTA AACTGGAAAG CTTTTTTGCA AATTAAAGCG
CTAGAAAGTA AAGATAGCCG CCTGACTCAC TTTTATAATG CCGGCACTTA CCATGAAGAA
ACCAAACTTA AGGATATTGA CTTTGTTGCC TTAGATTTTG AAACCACTGG ACTGGATGCA
AATCAAAACA GCATTATAAG CATTGGTTTA GTCCCTTTTA CTCTGCAACG AATTGCTTGC
AGACAGGCGA AACACTGGTT TGTAACACCG GAAGATAAAC TGCAGGAAGA TTCAATCATC
ATCCATGGTA TTACCCACTC AGATCTGAAA GGTGCGCCGG ATCTATTGCG GATCTTAGAG
CAGCTGTTGG ATGAACTGGC TGGAAAAATT GTGGTGGTGC ATTACCGCAG AATTGAACGT
GACTTCTTTG ATGCGGCGCT AAGAAGCTTA ATCAAAGAAG GCATTGTTTT CCCCGTTGTT
GATACCATGC AAATTGAAGC TGATATCCAG CAGGCTCGCC CGAGAAGCTT TATAGATTGG
CTTAAAAATA CCCGTCCAGA ATCGATTCGA CTCGCCAATA GTCGTACGCG TTATAATCTG
CCAACGTATC CGCCACACGA TGCTTTGACC GATGCAATTG CCACGGCGGA GTTACTGCAA
GCGCAAATTC ACCACCACTT CAGCCCAGAC ACACCAATAA AAAAACTGTT GTTATAA
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| Protein sequence | MRNFSNQEVL NWKAFLQIKA LESKDSRLTH FYNAGTYHEE TKLKDIDFVA LDFETTGLDA
NQNSIISIGL VPFTLQRIAC RQAKHWFVTP EDKLQEDSII IHGITHSDLK GAPDLLRILE
QLLDELAGKI VVVHYRRIER DFFDAALRSL IKEGIVFPVV DTMQIEADIQ QARPRSFIDW
LKNTRPESIR LANSRTRYNL PTYPPHDALT DAIATAELLQ AQIHHHFSPD TPIKKLLL
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