| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2319 |
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| Symbol | |
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| ID | 5610965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2812011 |
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| End bp | 2812865 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933229 |
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| Product | endonuclease/exonuclease/phosphatase |
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| Protein accession | YP_001474056 |
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| Protein GI | 157375456 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3021] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.159993 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.001053 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATTTT TCTCAAAAAC CAGATGGTTA CTGGCTTTAG TTTGTTTTAT TACTTTTAGT
TTTGTCCTGA CTTTTAGTGG GATTAACCAC GCTAACGGTA CTCCCAAGGT GATGATTAAT
TTGGTCGAAC CAATTTTTCA AACTCAGTGT GCACATCCTA CCTCCTCCGG TCACCTCGAT
ATTGACGGTA GGCTTAATGT GTCGGTGTGG AATATCTACA AGCAAAAAAG GAAAAACTGG
AAACAAGTGC TTAAGCGACT CTCTCATTCC AGCCAACTCG TGTTACTGCA AGAGGCCGGA
CTCACCACCG AGATGGTTGA TTTCATCAAC TCTCACTCCT TAAATGTGGC GATGACTAAA
GCGTTCAAAC TTTTTGGCAC TTCGCTTGGG GTAATGAATT TATCCGTCTC ACAAGCCAGC
AGTGCCTGTG CGTTTCATGC CACAGAGCCA TTGATTAGGT TCGCCAAATC GGCACTTATC
ACTCATTATC CTCTCTCCAA TGGTGAGACA CTTCTGGTGG TCAATCTTCA TGGAATCAAT
TTTGACTGGA AACTGACCCG TTATACCGAG CAGTTCGAAG CCTTAAGCCT GGAACTCGGT
GGGCATAGCG GTCCGATAAT TCTTGCCGGC GATTTTAATA CCTGGCGAAA CGACAGACTC
AAGCTGATCT ATGAGTTTGC CAAGCGTTTT GGTTTAAGTG AGGCTGAGTA TCATCTGGAT
GAACGTCAAC GATTTTTCGG CCTGGCCTTA GATCATCTCT TCTATCGGGG GCTCGATTTC
CATCATGCGG AATCTAAAGT GACCGACGCT TCGGACCATA ACCCAATTAT TGCCCATTTC
ACTCTGAAAT CGTAA
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| Protein sequence | MKFFSKTRWL LALVCFITFS FVLTFSGINH ANGTPKVMIN LVEPIFQTQC AHPTSSGHLD
IDGRLNVSVW NIYKQKRKNW KQVLKRLSHS SQLVLLQEAG LTTEMVDFIN SHSLNVAMTK
AFKLFGTSLG VMNLSVSQAS SACAFHATEP LIRFAKSALI THYPLSNGET LLVVNLHGIN
FDWKLTRYTE QFEALSLELG GHSGPIILAG DFNTWRNDRL KLIYEFAKRF GLSEAEYHLD
ERQRFFGLAL DHLFYRGLDF HHAESKVTDA SDHNPIIAHF TLKS
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