| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2305 |
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| Symbol | |
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| ID | 5613472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2792550 |
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| End bp | 2793254 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640933215 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_001474042 |
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| Protein GI | 157375442 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000065885 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTGTGG TGACTCAAAC CCTGATTGCA ACCGATATAA AAGGGGTACT TTTTGATCTC
GATGGGACAC TCGTCGATAC CGCCCCCGAT CTTATTGCCG CACTTAACAT GAGTCTTGAA
TCGTTCGACC ACCCGCAAGT GTCGCTGCAA ACCATGCGTC ACGTGGCATC TAATGGCAGT
TTGGCATTAG CTCAAGCTGC CCTGCCCGGT GCAACCGACA CTCAACACCG AGCCGTTCAA
CAGGGCTTAC TGGATAGCTA CGCACGAGTT AACGGAAACC ATTGCCAACT GTTCGATGGC
GTTGGAGGCC TTCTCGATTA TCTCGACACG AATGGGATCC CTTATGGCAT CGTTACCAAT
AAGGCGGCGA AATACACGCG TCCATTAATC CAAGCCCTAT CACTCACGCA AAGAATGAAA
ACGGTAATAA GCGGTGACAG TACGCAGTTT TCAAAGCCCC ATACCGCGCC TATGTTACTC
GCCGCGCAGC AACTTAATTG TCAGGTCCAT GAGATCTTAT ACTTAGGTGA TGCGGAGCGT
GACTTAGTCG CAGCTGCAGA TAGTGCAATG TTGGGCGGCA TCGCGCAATG GGGTTATATT
GACGACGTGA CTCACACTCA CTCCTGGCCG GGACAATTTT CTTTTGAATC CCCCACCGCA
ATCATCGACT TTTTTATTGA GTCAATTTCA AACAGACCAA TTTAA
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| Protein sequence | MTVVTQTLIA TDIKGVLFDL DGTLVDTAPD LIAALNMSLE SFDHPQVSLQ TMRHVASNGS
LALAQAALPG ATDTQHRAVQ QGLLDSYARV NGNHCQLFDG VGGLLDYLDT NGIPYGIVTN
KAAKYTRPLI QALSLTQRMK TVISGDSTQF SKPHTAPMLL AAQQLNCQVH EILYLGDAER
DLVAAADSAM LGGIAQWGYI DDVTHTHSWP GQFSFESPTA IIDFFIESIS NRPI
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