| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2285 |
|---|
| Symbol | |
|---|
| ID | 5611514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 2767589 |
|---|
| End bp | 2768875 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640933195 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001474022 |
|---|
| Protein GI | 157375422 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00134622 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGATGGAA CTATGCCTCA TTTTCCACGC AGCGCTCAGA TTAACCCACT CGCTAAATTT
CTATTCAGTA ACTTTAAACG CCCCTCAATG GGATTCGCTA TTTTACTTGG CTCGCTGGCA
GGTATCAGCG GATGTGAAGA GGTGGCACCG ACAATCATTC CTAAAGCAGT GGTCGTCGAG
CAGGTGTCAA CGGCCACCGT TCCTCTGTAT GGTAATTATA TCGGCATCAC TAAAGCCTCA
TTGGATGTTG AGGTGAGGGC TCGGGTAAAC GGTTTTGTCG AAGATAAGAG TTTCATCGAA
GGAAGTGGAG TAAAAGAGGG CTCGGTGCTC TATCGCATCG ACGATCGTCC CTATGTTGCT
GTGGTAAACC GCTTAAAGGC AAATATGGAG TCTCAGCAGT CGGTATTGGA TAAGGCTCAG
CGCGATGTTG AGCGATTAAA ACCTCTCTAT GAGCAAGATG CAGCCAGCCA ACTCGATTTC
GATAATGCAC TGTCTTTGTT ATCGCAAGCC AAGTCCAGTT TAGCTGCCAG TAAAGCACAA
TTGGAAGAGG CGCAGCTCGA ACTCAGTTAC ACCTCGATAC GTTCACCTAT CAGCGGCTTA
GTCAGTCGCT CCGAGGTGGA CATCGGTGCC TTGGTAGGAA GCAGTGGCCA GTCATTGTTA
ACCCGGGTCA AGCAGGTCGA TCCCATCTAC GTGACCTTCA ATATGTCGGC ACTCGATTAC
CTGAACGCAA GGCGACGTAT GACGAGTTAT TCAGAGAAAA AGGAGGCCGA GTCAGAGGGT
AAGGCAGTCG AAGGGTTTGT TACCATCACG CTCCCCGATA ACAGTGAGTA TCGCTATTTG
GGTGATGTAC GCTTTACCGA CCCGTCAGTA AATCCAGAAA CGGGCACCTT TCAGGTTCGC
GCCGAACTAC CTAACCCTGA TAAAGAGCTG CTTCCCGGTC AATACACTAA TGTGCGCATC
AAGCTCAATG AAGTGAATAA TGCCATCGTC ATTCCTCAAA AAGCCACTCA AGTTGAGCAA
GGTGGCGTGT ATGTGATGGT TGTCCTGCCC GATAACAAGG TCGAGCGACG TTTTATCGTC
ATCGATCATC AGGGACCCAT GGGGGTCGTG GTACAAAGTG GGTTAAAGGC CGGAGAGTTA
GTCATAATCG AAGGTATGCA TAGAGTCAGA CACGGCCAAA TTGCCGAGCC GTTAACGGCA
GAGCAATATC ATAAGAAAGA AGATTCAAAA GAGAAACAGC AGGCGCTTAA ACAACAAGAG
TTAGAGCAGA TACAGGAGCA AGAATAA
|
|---|
| Protein sequence | MDGTMPHFPR SAQINPLAKF LFSNFKRPSM GFAILLGSLA GISGCEEVAP TIIPKAVVVE
QVSTATVPLY GNYIGITKAS LDVEVRARVN GFVEDKSFIE GSGVKEGSVL YRIDDRPYVA
VVNRLKANME SQQSVLDKAQ RDVERLKPLY EQDAASQLDF DNALSLLSQA KSSLAASKAQ
LEEAQLELSY TSIRSPISGL VSRSEVDIGA LVGSSGQSLL TRVKQVDPIY VTFNMSALDY
LNARRRMTSY SEKKEAESEG KAVEGFVTIT LPDNSEYRYL GDVRFTDPSV NPETGTFQVR
AELPNPDKEL LPGQYTNVRI KLNEVNNAIV IPQKATQVEQ GGVYVMVVLP DNKVERRFIV
IDHQGPMGVV VQSGLKAGEL VIIEGMHRVR HGQIAEPLTA EQYHKKEDSK EKQQALKQQE
LEQIQEQE
|
|---|
| |