| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2281 |
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| Symbol | |
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| ID | 5611577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2760044 |
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| End bp | 2761720 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933191 |
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| Product | histidine kinase |
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| Protein accession | YP_001474018 |
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| Protein GI | 157375418 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.278764 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGGATCG GTGTGCTATC TTTCGCATCC CCCCACACCG TTTACCAGAG ATGGGCACCG
ACCTTCGATC GGGTTGCCGA GGATACGGGT CATACTTTTT CAGTGTTGCC ATTAACCCCA
GGTGAACTAC AAGAGTCTGT CGCAAATGAC AAGCTCGACT TCATTATCGG TAATGCACTC
ACCACAGTGA CATTTAAGAA AGATTATGGT GTGAGTAACC TACTTTCACT CGTCCCTAAT
TATCATTCTG ATCCGGATCA TGCCATTGGC TCAGCCTTGA TCACACGTTC ATCAATCAAT
ATCGAAGATA TTGAACAGCT CAGTACCATG TCTGTCGTCT CATCGGATCC TAATGCCTTT
GGTGGCTTTC AAATTCTGGC CGGTGAACTT GCATCTCTCA GTATTAACCC CTTTAAAGAC
TTTAAAAAGC TCACCTTCGT TGGTTTTCCC CAGGATAAGT TGCTCAACCT GGTATTAGAT
AAAAAGGCCG ATGTCGCTAT CTTGCCCTCT TGTGTGCTCG AATCGGCGAT CGAGAAGGGG
CTCGTTCCGG AATCTGCATT GAAAGTGGTG CTCCAAAAAG AGGTGCCAAA CTATGAATGT
GCAGTATCGA GCTCTCTGTA CCCCTCATAT GCCTTCTCCA AACTCGGCCA TACCAGTCAT
GTTTTGGCCA CCCAAGTCGT TAAATCCTTA CTGACAATTA CAAATAAAGA TAAAGAAGCC
ATTTCCGGGC GATATCAATA CTGGTCGGCA CCGGTAAATG ACCGCGAGGT ATTTAGATTA
CTACGTACAC TCAACCGGTG GCCATTTGTC ACCAATTGGG AGTTCTTACT TAAAGGTGCC
GTGCCTTGGG TCATTGGGGC TTTGATTCTT TTATTACTGG GATACCTACA CCATCTTCGA
GTCAAACGTT TGGTTGTCCT GCGTACACGT GCCCTATCTT CAGAGATGGA GCAGCATCAA
CACACCCAAA AGGAGTTATT TGAGCAACAA AAGCAGTTCT ACAAGGCTCA ACGAGTACTG
CTAACCGGTG AGATGGCCTC AGGTATCGCC CATGAGCTTA ATCAGCCCCT CGCCGGGATC
AGATATTTAA CCCAAGGCTG CCTGTATCGT CTGACACCCG AACAAGGTGA ATTAAATAGC
GCATTGAATA AGGCTATTGA ACAAGTCGAC CGGGCCCAGA GCACCATCAA ACGTTTCAGG
CAGTTTTGCC AGCAACCCAG TGTATATGAA AAATGCGATC TCAAAAATCT GATCGAAGAG
ACCCTGAACC TGATGGCCCC AGAGTTTAAA AGGATGAATA TCTCACCCAA GTTGTCACTG
GAACGAGTCA CAACGATTGC CGATATCAGC CTGATACAAC AGGTATTAGT CAACTTGATC
CGTAACTCAC TGGATGCAAT GGAGTCAGAA GCGTTGCCAG AGCTTGGGAT CAGGCTAGTT
AAAGAAGATA ATCAGGCATT AATTGTCATC GAAGATAATG GCATAGGTTT ATCAGAAGAG
GCCCTGAGTC GACTGTTTTT TCCTTTTGAA ACCTCTAAAG AGAAGGGGCT CGGCCTCGGT
ATGGTGATTT GCAAACGGAT CATTGAAGAA CACGGCGGTC AAATCCATGC CGTAAACCTG
ATTAAAGGGC TCAAAATTTC CGTTTCCCTG CCCATAAAGG AGCAACAAGA TGTGTGA
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| Protein sequence | MRIGVLSFAS PHTVYQRWAP TFDRVAEDTG HTFSVLPLTP GELQESVAND KLDFIIGNAL
TTVTFKKDYG VSNLLSLVPN YHSDPDHAIG SALITRSSIN IEDIEQLSTM SVVSSDPNAF
GGFQILAGEL ASLSINPFKD FKKLTFVGFP QDKLLNLVLD KKADVAILPS CVLESAIEKG
LVPESALKVV LQKEVPNYEC AVSSSLYPSY AFSKLGHTSH VLATQVVKSL LTITNKDKEA
ISGRYQYWSA PVNDREVFRL LRTLNRWPFV TNWEFLLKGA VPWVIGALIL LLLGYLHHLR
VKRLVVLRTR ALSSEMEQHQ HTQKELFEQQ KQFYKAQRVL LTGEMASGIA HELNQPLAGI
RYLTQGCLYR LTPEQGELNS ALNKAIEQVD RAQSTIKRFR QFCQQPSVYE KCDLKNLIEE
TLNLMAPEFK RMNISPKLSL ERVTTIADIS LIQQVLVNLI RNSLDAMESE ALPELGIRLV
KEDNQALIVI EDNGIGLSEE ALSRLFFPFE TSKEKGLGLG MVICKRIIEE HGGQIHAVNL
IKGLKISVSL PIKEQQDV
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