| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2280 |
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| Symbol | |
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| ID | 5611576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2758517 |
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| End bp | 2759635 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933190 |
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| Product | ApbE family lipoprotein |
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| Protein accession | YP_001474017 |
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| Protein GI | 157375417 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.406356 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.506741 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCGAGTA CGGTTATGGC AAAACCAAAC AGTGAGCTTG CCATCCAGGA AACATTTAAA
CCTTACCAAT GTGAGGGAAA TGGGATCATT AGCCATACCG GTGGCGTATC GACCCTGAAT
ACACTTAAGT ATTTTGGCAC ATCTATCACT ATCGATGTGT ATAACAGCAA GCCAGAACAA
GCGGGCCAAG CTCTCTGTCA TGCGCTTAAT GTGGTTCAGG AATATCACTA CCTGGCTTCA
AACTACAGCA CCTATCCCCA TGTTGAAAAT ATCAAAAGCA TTAATAATAG CCCGGCAAGC
ATACATAAGA TTGACCCCAA GCTAACTGCT CTTATAGCAG CGGGTTTGGA TTGGTATGAC
AAGAGTGATG GTTATTTTAA CATCGCCCTT TCTCCGGTAA TCAACCTTTG GCGAAAACAC
CGAAGTGAAT GTAAAGGTAA GATAAAAGAC AATGGTTTGT GCACCAAACC TGGAATGGAT
AAGCTACAAA ATGCCGCTGA ATATATCAAT ATAGAGGATA TTTCGCTTAA CCAAGCCGAT
AACACCATCC GCCTAAAAAC CGGCATGAGC ATTGACCTTG GTGGGATTGC TAAGGGGTGG
ATGGCAGAGA AAGTATATGA GCAACTAAAA TCTGAGGGGC TTACCTCATT TATGATCAAC
GCTGGTGGAA ATATACGTCA CTTAGGGTTA CACACTGAAG GCAGAGAGTT TGTCACGGCC
ATAGAAGATC CCCTCTGCAA GAAATTTGAT TATCAACTTC CTGAGTGTAG GGAGTTTGAG
GGCCAGTACC ACGAGGTCAT TCATGGTACT GATCTAACCA TAGTCTCCAG CGGTAACTAT
TTGCGCTATT ACCGGGTAAA AGACAAGGAA TACCATCATC TTATCGATCC CAAGACGTTG
CAACCTAAAC CGGAAGGGAT ATCAACGTCA GTTGTTCTCG ACGGACTGCA AATATTTGCC
GATGTGATTT CGACGACTCT ATTCTTAATG CCACTTGAGC AGGCTCTGGA ATTTGCAGAT
CGTTCAGATT ACCTGGAAGC AGTTTGGTAT TTAGACAATG AAGGGAATAA GGTAAGTTCG
GCTAACTTTG ATAAGTACAG GTTTAAACTA AGTGATTAA
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| Protein sequence | MSSTVMAKPN SELAIQETFK PYQCEGNGII SHTGGVSTLN TLKYFGTSIT IDVYNSKPEQ
AGQALCHALN VVQEYHYLAS NYSTYPHVEN IKSINNSPAS IHKIDPKLTA LIAAGLDWYD
KSDGYFNIAL SPVINLWRKH RSECKGKIKD NGLCTKPGMD KLQNAAEYIN IEDISLNQAD
NTIRLKTGMS IDLGGIAKGW MAEKVYEQLK SEGLTSFMIN AGGNIRHLGL HTEGREFVTA
IEDPLCKKFD YQLPECREFE GQYHEVIHGT DLTIVSSGNY LRYYRVKDKE YHHLIDPKTL
QPKPEGISTS VVLDGLQIFA DVISTTLFLM PLEQALEFAD RSDYLEAVWY LDNEGNKVSS
ANFDKYRFKL SD
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