| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2274 |
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| Symbol | |
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| ID | 5611654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2749344 |
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| End bp | 2750972 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640933184 |
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| Product | putative glutamate synthase (NADPH) small subunit |
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| Protein accession | YP_001474011 |
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| Protein GI | 157375411 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0531449 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCAC AGTCCCATGA TATGACAAAT CCACCGGATC TGCTGCTAAG TGATGGCACC
GGACCCTCCA CGCAGCGTCA GCCCATTTTT CAAAACTACC TTCCTCCCTG TAATCAAGGT
TGTCCCGCAG GCGAAAATAT CCAAGGCTGG CTGGGGCTAG CCCATGAACA GAAGTTCGAG
CAGGCCTGGC AACTCTTGAT AGCCGAAAAC CCTATGCCTG CGGTACATGG CCGAGTCTGT
TATCACCCCT GTGAGTCTGT GTGTAACCGG GCCAATGTAG ATAGCTCTGT CAGCATCCAT
CAGGTCGAGC GATTCCTCGG AGACATGGCA ATCGAGCAGG GATGGCAACC CAGATTCGAG
GCCAGACAAA GCGGCAAGAA GGTGCTCATA GTCGGCGCAG GTCCAAGCGG ACTGTCGGCG
GCGTATCACC TTGCACGGCT TGGTCACTAT GTCGAGGTGC GCGACGCGGG TCCCATTGCA
GGCGGTATGA TGCACTTCGG TATTCCAGCC TATCGTCTGC CTCGCACTAT TCTGGCGGCC
GAGATCCAAC GCATCGAAGA TATGGGGGTT AAATTTACCC TTGATCATAA GGTCGAAGAT
CTCAAGCAGG AAAAGTCGGA CGGACAATTC GACGCGGTCT TTGTCGCCGT CGGTGCTCAT
ATCAGTAGAA AAGTGGAGAT CCCCGCCCGT GAAGCGGGTC ATATCTTAGA TGCGGTGAGC
TTTTTAAGGG ATGTCGGCAA GGGGGAGGCG ACCAAACTCG GACGACGGGT CGCCATCTAT
GGTGGAGGGA ATACCGCCAT GGACGCCGCG AGAACCGCCA AGCGTCTGGG TGCCGAAGAG
ACACTGATCA TCTATCGACG CAATATGGAG CAGATGCCGG CCCACCAGTT TGAAGCGGAA
GAAGCCCTCG AAGAGGGGGT GAAGATTAAC TGGTTAAGGA CCATCAAGGA GATCAATCTC
GATCAGATCA CCGTCGAGAA GATGACCCTG GATGAACATG GTAAACCCGT GCCTACAGGC
GAGTTCGAAA CCTTAGAGGC CGATGCGCTA ATCTTAGCGC TTGGGCAGAA TATCGATTCC
GAGCTGCTTG CCTGCTATCC TGAGATCACC TTTAAACCCG ACGGTACGGT TATCGTCGAT
GAGCAGATGA TGACGGCGCG TAATGGCATC TTCGCCGGTG GTGATATGGT GCCCTGCGAT
CGCACGGTCA CCATAGCCAC AGGCCATGGA AAGAAGGCGG CCCGTCATAT TCATGCATTC
CTCTCCGGCA CCGTTCACCG AGGCAGATGT AAGCCTCCGG TTGCAGATTT CGAGTCGCTA
AACCTCTGGT ATCTCACCGA GGCGGAGCAA ACCCATCAGC CCACACTTCC GGTAGATAAA
CGCGATCACT CATTTGCCGA GATCCTCGGC AGTCTCGATA CAAAGCAGGC CACGTTCGAG
GCCAGCCGTT GTTATAGCTG CGGTAACTGT TTCGAATGTG ATGGCTGTTA TGGCGCTTGT
CCAGAGCAGG CCATTATCAA GCTTGGGGAA GGGCGTTTCT ATCAGATCGA CTACTCCCGT
TGCACAGGTT GTACAGCCTG TACCTTACAG TGTCCCACCG GTGCCATACA TATGGTCACG
ACGCGCTAA
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| Protein sequence | MKSQSHDMTN PPDLLLSDGT GPSTQRQPIF QNYLPPCNQG CPAGENIQGW LGLAHEQKFE
QAWQLLIAEN PMPAVHGRVC YHPCESVCNR ANVDSSVSIH QVERFLGDMA IEQGWQPRFE
ARQSGKKVLI VGAGPSGLSA AYHLARLGHY VEVRDAGPIA GGMMHFGIPA YRLPRTILAA
EIQRIEDMGV KFTLDHKVED LKQEKSDGQF DAVFVAVGAH ISRKVEIPAR EAGHILDAVS
FLRDVGKGEA TKLGRRVAIY GGGNTAMDAA RTAKRLGAEE TLIIYRRNME QMPAHQFEAE
EALEEGVKIN WLRTIKEINL DQITVEKMTL DEHGKPVPTG EFETLEADAL ILALGQNIDS
ELLACYPEIT FKPDGTVIVD EQMMTARNGI FAGGDMVPCD RTVTIATGHG KKAARHIHAF
LSGTVHRGRC KPPVADFESL NLWYLTEAEQ THQPTLPVDK RDHSFAEILG SLDTKQATFE
ASRCYSCGNC FECDGCYGAC PEQAIIKLGE GRFYQIDYSR CTGCTACTLQ CPTGAIHMVT
TR
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