| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2258 |
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| Symbol | |
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| ID | 5611865 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2726434 |
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| End bp | 2727324 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933168 |
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| Product | transcriptional regulator |
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| Protein accession | YP_001473995 |
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| Protein GI | 157375395 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGATC TCAATTGGCT TAAAACGTTT GTCACCTTAG CGGAGCACCA ACATTTCGGC
AAAGCCGCAG CGGCGCTGCA CATGACTCAA CCTAACGTAA GCCTGCATAT CAAGCAGTTA
GAAAGTACGA CGCGGGTTAA GTTAATTGAA CGTAATCCAT TTCACCTGAC CGAAGCGGGC
GTTCGATTGT TGAAGACTAG CCAGAAAACC TTAATGGAGT TGCAGGTTTG TCAGGCGGAC
CTCAACGCGA TTAATGATCT TAGCCAAGGG ACGCTAACCA TCGCGGCCAG CGATATCATC
TCTCGCTTAC TCTTGATATC ACCATTTCAG TTGTTTAAAG CCGAATTCCC CGGAATCGAT
TTTTCTTTAT TGAATACCAC CTCATCACAA GCATCAGAAT TGGTTAAAAA CGCACAAGCT
GATTTGGGCT TTGTGATAGC CCAAAAAGAG AGTCAGCCGC TGCACTTCAC CGAGTTACAA
CAGATCAGGT GGTGCGCGCT AGGAGATAAT CTGGCGTTAT GGCAACAGGC AAAGCTGCAG
CCTGAACTGG TATTAGAGAG TGAACCCACC TTGATCTTAC TGGGCCATGA TACCCGTACC
CGGGATCTGC TCGACCTAGC CTTGCCATCG CTGAATCTGC CAAAGTATCG GATCATGGAG
GTGGGTAGTG TCGATGCACA GATAGACTGG GCAGAAGCGG GTTTTGGTGT GGCTATAGTG
CCGGAGTTCT CGATTCATAC TAAACGAAGC CTTAAGACCA AGGTGACGCC ATTACCCGAG
TTTCCCACCA CCAGCCTGGG TTATATTGTG CGTCAAAATC AGATCCTATC GAAAGCGATT
AAGCAGTTAT TAAAATGGGT CGATGAGGAG ATTATTCGGT CGCAGAAGTA G
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| Protein sequence | MLDLNWLKTF VTLAEHQHFG KAAAALHMTQ PNVSLHIKQL ESTTRVKLIE RNPFHLTEAG
VRLLKTSQKT LMELQVCQAD LNAINDLSQG TLTIAASDII SRLLLISPFQ LFKAEFPGID
FSLLNTTSSQ ASELVKNAQA DLGFVIAQKE SQPLHFTELQ QIRWCALGDN LALWQQAKLQ
PELVLESEPT LILLGHDTRT RDLLDLALPS LNLPKYRIME VGSVDAQIDW AEAGFGVAIV
PEFSIHTKRS LKTKVTPLPE FPTTSLGYIV RQNQILSKAI KQLLKWVDEE IIRSQK
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