| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2249 |
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| Symbol | |
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| ID | 5611954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2713427 |
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| End bp | 2714071 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933159 |
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| Product | TetR family transcriptional regulator |
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| Protein accession | YP_001473986 |
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| Protein GI | 157375386 |
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| COG category | [K] Transcription |
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| COG ID | [COG1309] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.672555 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAAAAC CATCAGAAAT AAATACGCGA AAAAAGCGTA AGAGCCTTCC TCAGAATCGA
GGAAATGTAA GAAGAGAAAA GCTGATCCTT GCCGGCAAAA GTTTGCTCGA AGAGCGCTGT
ATCGAAGAGA TTTCGCTGGC CAATGTCGCT AAACTTGCCG AGATCCCGCT GGCATCCAGC
TATCACTTCT TCCCCAATAT CAATAGTCTG TGGGTGGAGA TTGCGTCTGT ATTTGGAACT
GAGATCAGCC AAGTCATATT CAAGTCGTTC ACACTGGATG AAGATGATAA TTGGCAAGCC
ATTATTCGGA TCTGTATTCG GCGTGCGGCC GAGCTCTACC GTAATAACAG GTCGTATCAG
CAATTGATCA TCGGAGGTAA GACTCCCGCT TATATCAAAT TAGCCGATAG ACGAAATGAT
GAGGTCATAG GAAGGCTATT GATCGACGCC ATAGAAGATC ATTTTGTTAT TCCGGACTTC
CCGGACCAGG CACAGGTCTT TTTCCACGCC GTGGAAATTG CCGATCTGAT GTTTATGTTG
TCGGTTAATA AACACGATGA GATAACCGAT ACGATGGAAG AGGAAGCGAA AAGAGCCAGT
ATCGCCTACC TCAAATGTTA TCTGGGAGAG TTTTTACATC AGTAG
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| Protein sequence | MTKPSEINTR KKRKSLPQNR GNVRREKLIL AGKSLLEERC IEEISLANVA KLAEIPLASS
YHFFPNINSL WVEIASVFGT EISQVIFKSF TLDEDDNWQA IIRICIRRAA ELYRNNRSYQ
QLIIGGKTPA YIKLADRRND EVIGRLLIDA IEDHFVIPDF PDQAQVFFHA VEIADLMFML
SVNKHDEITD TMEEEAKRAS IAYLKCYLGE FLHQ
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