| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2248 |
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| Symbol | |
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| ID | 5612093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2710844 |
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| End bp | 2713177 |
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| Gene Length | 2334 bp |
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| Protein Length | 777 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933158 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001473985 |
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| Protein GI | 157375385 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.355949 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAATGA AACCAAGTTC TGTAGCCATC GCCATCACGA TGGCAATCGC GTCAAGCCAG
GTACACGCGA ATGAAGATGA GTCGGGCACG ACCGAACAGC CTGAGATTAA AAAATCCAAG
AGTTCGCTAA TAGAAAGAAT TGAGGTAACG GCGCAGAAGC GACTCCAATC TGCCGATGAC
ATCGGTATGC CTATCGCGGC ATTTAGCTCG CAGCAGATGA AAGATCTGGG CATCAACAAC
GCCATCGATA TCACCAAGTT TACCCCCGGG GTGGTTTATT CTGAAACCTC CGCGGTTGGC
GTCCCAATCT ACACTATTCG CGGTGTGGGC TTTGATGACT ACAGTACCGC AGCAAACTCG
ACGGTCGGTA TTTATGTGGA TGAAGTGAGT CTGCCTTACC CCATTATGAC CCGTGGACTG
CAATTTGATG TGCAACGTGT GGAGATCTTA AAAGGGCCGC AAGGAGATCT GTACGGCAGA
AACAGCACGG GGGGCGCGTT TAACTTTATC AGCAACAAAC CGACTCAGGA TTTTGAACTG
GGCGTGAACC TGGAGTACGG CAGTTACCAG AGAGTGAAGA CCGACGGTTT TATCAATGGC
GGTTTAACCA ATAACCTGAG TGCTCGCTTC TCCTTTGCTA CCCTCAATGA GGGGGAGGGT
TGGCAAACCC ATGCAGTAAC AGGTGAAGAT AATGGCGCGC AGGATCAGCT GGGATACCGA
TTATTAGTTA ACTGGGACCT CTCTTCCGAT GCCAGTTTAC TCTTTAATGT TCACGGCGGC
AGAGACAAAT CGGAGAATTC CGTTCCTCAG GCATTTGCTT ATCGTCCTCT GGTTCCAGGC
TTCGGTACCG TCCCCACAGA TATTGACAAA ATAAATCTCA ATGATTCAAG TAGTGCCTCA
TGGGGAGTAT CGGATTTTGA AGGGACATCA CCGATAGAAA CCAAGCGTGA CAGCAATAGT
TTTGGTGCAT CGGTCACGCT CGATTGGGCA TTGAATGATA ATTTGTCACT CACCTCAATC
ACGGCTTATG AAGAGTTTGA TCGAAAAGAC GGCAACGATT GGGATGGCAG CGATCTGCGC
AGCACAGATG TGTATAACGA CAGCGATATT CAGGCCATTA GCCAGGAGTT ACGCTTATCA
GCGGATAATG GTGAAGACTT TTCTTGGATT GTCGGCGCCT ATGCCTCCTC AGACTCAGTC
AAAGAGAGCT TTTTCTCCGA TGTTGTTCAG GCGAGTAACT CTGATTTCAC ATGGATAGCA
CCCGACATGT ACCTTCAGTA TGTCGATACA AGGTATGAGA TCAATACCAA AACAGCGGCG
CTATATGGCC ATACCGAATG GGATTTTGCA GAGGATTGGA CGCTAATTCT CGGTGCACGT
TACACGGCTG AGGAGCGTGA GTTACTCGAT GCGTGTACCT ATGATGTGGA AGGCGCGTTA
ACGCCAATTT TGGGCACCGG ACCGGGCGAT TGCGGTACGG TAAACCCGGA GACCGGAATG
ACAGAAACAT TCAGCGATGA GCTATCTGTA AGTAACCTGT CAGGAAAAGT CGGTATCAAT
TACAAGCTTA ACCAGGATGT ATTACTCTAT GGCTTAGTCA GTAATGGTTT TAAATCAGGT
GGTTACCAGG GAGCCCACGC ATCATCGACC TCACAATGGG GGCCGTATGA TGAGGAGATC
CTTAATGCTG CCGAGCTAGG CTTCAAATCG GTCCTACTCA ATAACACCAT GAAGGTAAAC
GCCTCCGTAT TTAATTACTG GTATAAGGAT AAGCAGGTAC AAGATACCCT GGTCGATCCC
CTTTTTGGTC CCTTGAGTGT CATCATAAAC CTGGAAGAGA GTGAGATCCG CGGCGCCGAA
ATCGAATGGG TATTGAATCC ACTCGATGGC TTAGATCTGC GAGTCTCAGG CACCTGGCTT
GATACTGAAG TGATAGAGGG AACCGGGATC AACTTGGAAA CCTTAGAACC TATGGACCTT
GCAGGACAGA AACTGACCAA TTCGCCAGAG CTTCAATGGT CAGCACTTAT TTCATATGAA
GCTGAAATTG GTGACGATTG GCTACTTAGA AGCCAACTAG ATGGGTTTTA TAGCGACTCA
TCCTTCTCTT ACCTGACTAA CGATCCTGAG CTGAACACCC TTGAGAGTTA TACCGTGGCA
AATCTACGTT TTGCATTACT TCAATCTGAC GGGGCATGGG AAGTATCCGC CTTCGTTCGC
AACTTAACCG ACGAGTCCTA TTACACCTCT TCATCCTATG CTAACGACAT CTATTCTCGT
TCGATGGCGC GTCCACGTAC TTTCGGGGTT GGTTTTAGCT ACAGCTTTTA TTAA
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| Protein sequence | MLMKPSSVAI AITMAIASSQ VHANEDESGT TEQPEIKKSK SSLIERIEVT AQKRLQSADD
IGMPIAAFSS QQMKDLGINN AIDITKFTPG VVYSETSAVG VPIYTIRGVG FDDYSTAANS
TVGIYVDEVS LPYPIMTRGL QFDVQRVEIL KGPQGDLYGR NSTGGAFNFI SNKPTQDFEL
GVNLEYGSYQ RVKTDGFING GLTNNLSARF SFATLNEGEG WQTHAVTGED NGAQDQLGYR
LLVNWDLSSD ASLLFNVHGG RDKSENSVPQ AFAYRPLVPG FGTVPTDIDK INLNDSSSAS
WGVSDFEGTS PIETKRDSNS FGASVTLDWA LNDNLSLTSI TAYEEFDRKD GNDWDGSDLR
STDVYNDSDI QAISQELRLS ADNGEDFSWI VGAYASSDSV KESFFSDVVQ ASNSDFTWIA
PDMYLQYVDT RYEINTKTAA LYGHTEWDFA EDWTLILGAR YTAEERELLD ACTYDVEGAL
TPILGTGPGD CGTVNPETGM TETFSDELSV SNLSGKVGIN YKLNQDVLLY GLVSNGFKSG
GYQGAHASST SQWGPYDEEI LNAAELGFKS VLLNNTMKVN ASVFNYWYKD KQVQDTLVDP
LFGPLSVIIN LEESEIRGAE IEWVLNPLDG LDLRVSGTWL DTEVIEGTGI NLETLEPMDL
AGQKLTNSPE LQWSALISYE AEIGDDWLLR SQLDGFYSDS SFSYLTNDPE LNTLESYTVA
NLRFALLQSD GAWEVSAFVR NLTDESYYTS SSYANDIYSR SMARPRTFGV GFSYSFY
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