| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2207 |
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| Symbol | |
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| ID | 5613144 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2664796 |
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| End bp | 2666088 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933111 |
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| Product | phage integrase family protein |
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| Protein accession | YP_001473944 |
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| Protein GI | 157375344 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.151276 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGATGC CTCCTGTTTT TCCACTGTTT GAATCAGCAA GCAATATCGA GGAGGGGAAT
AGCATCGTCA ATCAGCACAT TACGCGGATC AGCATAGATA CAGTTCCGGA TGCGGGACTG
GTTTACGAAC ATGCAACAGA GTTACTCTAT GAGCAGAAGC ATAATGAGAA TAGTTATAAG
GCATACAGAA GCGAACTCAC CACCTTCTTT CACTGGTGCT TCGATGTCGC CGGACAAACC
CCGGCTTCAT TAACCCGTAG GGAGATAGCG CGATATATCG ATTATTGTCA GCATCCACCC
GAAAACCTGA TTGGCTACTT TAATGTTGCT CAATTTAAAC TCGATAAAGC ATCCGGGGAG
AGGGTACCTA ATCATGCCTG GCGTCCGTTT GTGGGTAAGA AAGCACTGGG TAAAGAGCAG
CCTTATAGCT TGAGCGAGAA CGCGTTAAAG ACAAAAATTG CCATTCTCTC CTCCTTCTAC
AGCTATTTAA TGAGCGAGGA CTACTGCGAA CGTAACCCGG CACAAGCCTG GATGAACCAC
AGTCGGTTCT CCTCGAAAAA GAAATACCAG GTCAAAATGG AGGAGGGCAG CGTGCTCTCA
TTCACCGAGT TACAGTGGTC CTATGTTATC GCGTCAGTTG AACAGTTGGC TAAGGAGGAA
CCGGAACTGC ACCAACGAAG TCTGTTTCTT ATTAAGCTTA TCTATTTTTG TTATCTTCGT
ATCTCTGAAG TGGGGGCCAG GGCAGGCTAT TCACCGGTCA TGGGGCAATT TAAGCAAGAC
AAACAAACCG GGATCTGGAG CTTTTACATT CCCTTAAGCA AAGGGGGGAA ACGACGTAGC
GTCGCTATAT CGAAGGCTCT ACTCGCAGGA TTAGTAGAGT ACAGAAGGCA CCTGAAACTG
CCAGATTATC CGACTCAGGG TGACAATCAT CCGCTTTTTA TCAGGCACAG AGCGGCAGGG
CGAGGCAGGG ATGTTGGTGC TATTAATGCT AACTTAGGGA TCCGCCAAAT AAGGGAAGAG
ATCGAAAATA TCATTGAACA TGCGGCTAAA AGTGCCGAAA ATGACGGATT TGGCGAAGAT
TCAAAGCAGA TGAGGGGATT AACTGCCCAT AATATTCGCC ATACGGGGAT CACCCATGAC
ATCAATATTA ACGGCAGACC GTTATCTCAT GTACAAGCCG ATGCAGGGCA CGAGAGTATC
GATACCACAT CGCAATATCT GCATACCTCA CAGATAGAGC GGCATCAAAG TGCACAAAAT
AAAGTACTGG ATCATCTGCA GGGAATCGAA TAA
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| Protein sequence | MQMPPVFPLF ESASNIEEGN SIVNQHITRI SIDTVPDAGL VYEHATELLY EQKHNENSYK
AYRSELTTFF HWCFDVAGQT PASLTRREIA RYIDYCQHPP ENLIGYFNVA QFKLDKASGE
RVPNHAWRPF VGKKALGKEQ PYSLSENALK TKIAILSSFY SYLMSEDYCE RNPAQAWMNH
SRFSSKKKYQ VKMEEGSVLS FTELQWSYVI ASVEQLAKEE PELHQRSLFL IKLIYFCYLR
ISEVGARAGY SPVMGQFKQD KQTGIWSFYI PLSKGGKRRS VAISKALLAG LVEYRRHLKL
PDYPTQGDNH PLFIRHRAAG RGRDVGAINA NLGIRQIREE IENIIEHAAK SAENDGFGED
SKQMRGLTAH NIRHTGITHD ININGRPLSH VQADAGHESI DTTSQYLHTS QIERHQSAQN
KVLDHLQGIE
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