| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2202 |
|---|
| Symbol | |
|---|
| ID | 5613169 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2660418 |
|---|
| End bp | 2661041 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640933106 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473939 |
|---|
| Protein GI | 157375339 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0262907 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGCA TGATGATAAT CACGGCGGGC GCAGTTTGTG CGGCGGGGGC TTGGTGGTGG
TTAAAGTCAC CACGGTCAAC GCCCGTAGCC GTCAACTCTT CCTCTCCTGG TCAAACGAGT
GGTGCTGATT CACCGCTCGA TTACCTCAAT TTTGATTTTA ATAAAATACT GTCGGGAGAC
AGCAACATGC CAATATCAAA CAAACCATAT CAACAATCTG GCGGTGATCC TGTACCAAAA
GGTATTAGGA ACAATAACCC GCTAAATATA GAGGCTGGTC GTGACCAATG GCAGGGCATG
AAGGGCGATG ATGGTCGCTT TATCATCTTC GAGTCTCCAT TTTGGGGCAT TCGTGCTGCC
GCTCGTACTC TTAAAACTTA TCGAGATAAA TGGGGGCTTA ATAATGTTCA AGATATTGTT
ACCCGTTGGG CTCCGCCAAG CGACAATAAC CCGACTGATA AATACATTTC ATTCGTGGCT
AGAAAAGCTG GGGTTTTGGC CTCTCAACCA TTAGGCGCGG CTGATTATCC TCGGGTAGTT
TCTGCAATGA TTCACTTCGA AAATGGATAT AACCCATATG ATGAAATCAC TATCAGCAAT
GCAACTGCCG AAGGGTTCGC ATAA
|
|---|
| Protein sequence | MRRMMIITAG AVCAAGAWWW LKSPRSTPVA VNSSSPGQTS GADSPLDYLN FDFNKILSGD
SNMPISNKPY QQSGGDPVPK GIRNNNPLNI EAGRDQWQGM KGDDGRFIIF ESPFWGIRAA
ARTLKTYRDK WGLNNVQDIV TRWAPPSDNN PTDKYISFVA RKAGVLASQP LGAADYPRVV
SAMIHFENGY NPYDEITISN ATAEGFA
|
|---|
| |