| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2167 |
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| Symbol | |
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| ID | 5610972 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2622639 |
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| End bp | 2623829 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933071 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001473904 |
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| Protein GI | 157375304 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCTACAA AAAAACAGAT TATTTTGCCT ATTGTCGTAT TATCCGTTGG GATCGGCGGT
TTCGTTGCGA TGTCGGCAAT GAAGAAACCA CCCGAAGAGA AAGAGGCGGT TGACAATACC
CCATTAGTTG CCGTCAAGCA GGTCGAAATT AAACCTATGA CATTCTCTGT CAACTCCTAC
GGTATCGTCA GTGCTAAATA TGAAACAGAG CTGGTTTCTC AAGTTAACGG TGAGATAGTC
TTCCTGTCGG AGAGTTTTGT ACGAGGTGGA TTTGTTAAGA AAGGCACTGT TCTGGCCAAA
ATTGACTCCA GTGATTATGA CGCCGACCTT ATCGATGCCC AGGCCACTCT GGCATCCGCC
AGAGCGACCC TGGTTCAGGA AAAGGCCTAC GGTAAGGTAG CCGAAGAGGA ATGGAAACGG
ATCAAGGATG GCGTACCGAC CGAGCTAAGC CTTAGAAAAC CACAGCTGGC TCAAGAGATA
GCGAAACTGA ACTCCTCTGA AGCTGGCCTT AAGCGCGCAC TGCGAAATGT CGAGCGCACC
ACCATTAAAG CGCCCTATGA TGCCCTTATC GAAAGCAGAA ATATTGGTTT AGGCTCCTAC
GTCAGTAAAG GCACTCCTCT GGGTAAAGTA TTAAATACGG ATAATGCAGA AGTTCGCCTC
CCCCTTGCAG ATAAAGAGCT CCAATACCTA ATCAAAAAAG GTAAAAATGC CAAGGTTAAT
TTAATTGCCG ATCTCGGTGG TGAGAAGCAG GAGTGGACAG GCACTGTTGT ACGCAGTGAA
GGCGTTATCG ATAGTCGCAG CCGAATGACC TATCTGGTTG CCGAAGTGAT CGATCCTTAC
GGACTAAAGT CAGATAAAAG CGAGCTGAGA TACGGCACCT ATGTGACCGC AAATATTGCC
GGTAATGACG CAGGTAATGT TGCCGTTGTC CCAAGACACC TTATCGTAAA TGGACAGATC
GCAGTATTGG ACGATGAGAA AAAATTACGA TACAAGCCGG TTAACATCAT TCGACAGTTT
GGGGCCGAAG TCGTTATATC TGAAGGGCTT GATGCAGGGA TGAACATCAT CACCTCGGCG
CTGGATTATC CGGTAGAGGG GATGCAGCTG GCCCTGCCTG AAGATAAGAT CCTACAAGAG
GATGATTCTG AAGAGTCTGA GACTCAGTTA GCGATGGAAG AGAAGGAGTA A
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| Protein sequence | MATKKQIILP IVVLSVGIGG FVAMSAMKKP PEEKEAVDNT PLVAVKQVEI KPMTFSVNSY
GIVSAKYETE LVSQVNGEIV FLSESFVRGG FVKKGTVLAK IDSSDYDADL IDAQATLASA
RATLVQEKAY GKVAEEEWKR IKDGVPTELS LRKPQLAQEI AKLNSSEAGL KRALRNVERT
TIKAPYDALI ESRNIGLGSY VSKGTPLGKV LNTDNAEVRL PLADKELQYL IKKGKNAKVN
LIADLGGEKQ EWTGTVVRSE GVIDSRSRMT YLVAEVIDPY GLKSDKSELR YGTYVTANIA
GNDAGNVAVV PRHLIVNGQI AVLDDEKKLR YKPVNIIRQF GAEVVISEGL DAGMNIITSA
LDYPVEGMQL ALPEDKILQE DDSEESETQL AMEEKE
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