| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2148 |
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| Symbol | |
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| ID | 5610530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2599619 |
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| End bp | 2600602 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640933052 |
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| Product | putative ABC transporter, permease protein |
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| Protein accession | YP_001473885 |
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| Protein GI | 157375285 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0842] ABC-type multidrug transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.249033 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.497773 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGCAC TGTTTGCACT GATCACCGCC CGTAATCTTG AGTTTCTTCG TGATAAGTCG
GCGCTGGGTT GGTCACTTCT GTTTCCCATC ATCATAGTGA TCGCGCTGGT GTTGGTGTTT
GATGATGATA ATCCGACGCT CTATCAGCTT GGTGTTTATG GTGAGGTAGA ACAGATAGAA
AAAATAACGG CATTAAAGCA TGTCGAAATT ATCTACTACA GCGACCTGGA ACAGGCAAAA
CATAAGGTAT CCAGGCATTT AGTCGATGGC TTGATAAGCA ATGACACTTA CTGGGTCAAT
CCTGAGAGCG CGCAAGGTTA CATCCTGGAG CAACTCATTC TTGGCAAGTT ACCTCAGTTA
CATCAAAGGG CTATCGCTGG TAAAGCCGTG CGCCATGTCG AGTGGATTTT ACCCGGTATC
ATAGGTATGA ACATGATGTT CTCGGCCCTC TATGGCGTTG GGTATGTCGT GGTCAGGTAC
CGAAGAACCG GCGTACTCAA ACGCCTGCAG GTGACGCCAC TCGCCGCGTG GCAATTTCTG
GCATCACAAC TGATCTCCAG ATTGGGCGCC ACGGTTCTCT CAGCCATATT AGTGTTTGCG
GTTATCGCTG TCATGTTCGA TATCCGCTCT CAAGGCAATG TGGCCCTGTT GGTACTCAAT
ACCCTGCTTG GCAGCGCAGC CATGATTAGT ATCGGCTTGC TGGTGGCCAG TCGCACCCGA
TCCGACGAGT TGTGTAACGG TCTGCTTAAC ATCCTCTCCT GGCCGATGAT GTTTCTGTCG
GGGATCTGGT TCTCTCTGGA AGGCAGCAAG CCCTGGGTCA GGTTCTTAGC CGACTGCCTG
CCGCTGACAC ATATGAATGA TGCTAACCGA GCCGTGATCA TTGACGGCGC TGGCCTGTTA
GATATAGGCG ATCACCTGCT GTTTCTCGTT GCGATTATCC TGACCTGTTT GGGAGTCGCG
AGCCGCAGTT TTCGCTGGGA TTAA
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| Protein sequence | MNALFALITA RNLEFLRDKS ALGWSLLFPI IIVIALVLVF DDDNPTLYQL GVYGEVEQIE
KITALKHVEI IYYSDLEQAK HKVSRHLVDG LISNDTYWVN PESAQGYILE QLILGKLPQL
HQRAIAGKAV RHVEWILPGI IGMNMMFSAL YGVGYVVVRY RRTGVLKRLQ VTPLAAWQFL
ASQLISRLGA TVLSAILVFA VIAVMFDIRS QGNVALLVLN TLLGSAAMIS IGLLVASRTR
SDELCNGLLN ILSWPMMFLS GIWFSLEGSK PWVRFLADCL PLTHMNDANR AVIIDGAGLL
DIGDHLLFLV AIILTCLGVA SRSFRWD
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