| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2142 |
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| Symbol | |
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| ID | 5610552 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2591241 |
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| End bp | 2592002 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933046 |
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| Product | hypothetical protein |
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| Protein accession | YP_001473879 |
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| Protein GI | 157375279 |
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| COG category | [K] Transcription |
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| COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.532898 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0656443 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATACGA TCGATACAAA ACCTTGTCAG GTTTCACCGC AGCAGATGCA ATTAATCAGT
GACTACCTGA TTCAATTCGG GATCACTGAA TTTTTTTACG GGATCACCAC AAAAAACAGA
ATGCCTCAGG GAATTGATTT TAAAAAATTG AGCCGTCGTG TCCCCAAAGA GATGCAGAAG
GCCCAATACA GTGTCTTTTC GAGTGAGAAG ATACGACGCT TCAGGCACGA CTACCTTCAA
TCTTTTGCCC GTATAGATGC CGGTTACCAG GAAAAAAATG TCATGGGATT GAATATCTGG
CGCGATCCCG ATTACAGCGG TGGTAAAGGT GCCCAATTTA GGAAGTTGAT GGAGCAGTAT
GGCCTCAACA GTCGTGGCGT TTGGTATTTT CCGGTTAAAT ACCATAGTGA TTGGACCGCC
GTGTTTGTCT TCTTCTCTAA CCTTGAGCGA AATGAGCTGA CACAGATGCT TAACGACAAC
ATCGAGGAGA TAAACGCCCA GCTGCAGCTG TTTTCAAGCT CACTCAACGA GCAATTTATC
ACCCAGATAA ATCCAATCAC AAACTTTAAC TGCCTTTCAG ATAAAAGCCT GAAGGTGTTG
GCACTTACGG CCGAGGGCTA TGCCTGCGAT GAGATAAGTC ATAAGCTGAT GCTTACTGAA
AGTGGTGTGA ACTACCACCT CACACGACTG AAGGAGCTGT TTCATGCCAA AAACCGTGCT
CAACTGGTCA ACCTGGCCCA CACATTGGGG GTGCTGGATT AA
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| Protein sequence | MDTIDTKPCQ VSPQQMQLIS DYLIQFGITE FFYGITTKNR MPQGIDFKKL SRRVPKEMQK
AQYSVFSSEK IRRFRHDYLQ SFARIDAGYQ EKNVMGLNIW RDPDYSGGKG AQFRKLMEQY
GLNSRGVWYF PVKYHSDWTA VFVFFSNLER NELTQMLNDN IEEINAQLQL FSSSLNEQFI
TQINPITNFN CLSDKSLKVL ALTAEGYACD EISHKLMLTE SGVNYHLTRL KELFHAKNRA
QLVNLAHTLG VLD
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