| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2138 |
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| Symbol | |
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| ID | 5610566 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2584412 |
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| End bp | 2585752 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933041 |
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| Product | inner membrane transport protein YdhC |
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| Protein accession | YP_001473875 |
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| Protein GI | 157375275 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.030791 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0211298 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAAAAA TAAACGTTTC ACATCATTTA AGCAAGTATT TAGACTCCGG ATCCTCAGTA
AACATCAGAT TAAATATTTA TATGAATCCA GTTAATAACA CCAAGTACTT CTTCTTTTTA
GGCTACCTTG CATTGCTCAG CATGTTGGGT TTTATCGCGA CCGATATGTA CCTTCCGGCA
TTTAAAGCGA TAGAAGATTC TATGCAAGCA ACCCCTGCTC AAGTCGCAGG CTCGTTAACC
TGTTTCCTAG CCGGTTTGGC CATAGGACAA CTCCTGTATG GACCATTAGT ACAGCGTATA
GGAAAACGTA ACTCACTGCT ATTAGGTCTT ATGATTTTCG CAGCAGCGAG CTTTTCACTT
GCATCGAGTG AAACCGTGCT CTCTTTTAAC ATTGCCAGAT TCTTTCAGGC ACTAGGTGCG
TGCAGTGCGG GTGTCATTTG GCAAGCCATT GTTATCGAGA AATATGACGC CACTAAAGCC
CAGAGTGTTT TTTCTAACAT TATGCCGCTT GTCGCACTTT CACCCGCATT AGCTCCGCTA
TTGGGAGCTT TCGTACTTGA AATTAGTGGA TGGCCGACTA TCTTTTTGAT TTTAACTTGT
TTAGCTATCT TTCTTATGTT GCTAACCGTT CTGTTTGTGC CAAAAGAAAA AGTGACGAGC
ACTGCACAAG AGGGGACAAA AAAGCTCACT TATTGGAACT TATTGAATAA CCCTAAGTAT
CTGGGCAATG TGATCATCTT TGGTGCCTGT TCTGGTGCAT TCTTTGCCTA CTTAACCGTT
TGGCCGATTG TTATGGAGCA GCATGGATAT CAGGCTAAAG AGATCGGATT AAGTTTCATA
CCACAGACCA TCATGTTTAT TGTCGGTGGC TATGCGAGTA AGATTTTAAT TCGTAAAGTG
GGTACAGAAA AATCACTCAG CGTCTTACTG ACTTGTTTTG GTCTGTGTGT AGTGGCGATT
GTCGCCTGTT CATTGCTAGT TAAAATGGAC AGTATTCTAC CTCTGCTGAT CTCATTCTCA
ATCCTTGCCG GTGCAAATGG TGCAATCTAT CCGATTGTGG TCAACAGTGC CCTTCAGGAG
TTTACCAAGC ATGCCGCAAA GGCGGCGGGT CTGCAGAACT TCCTACAGAT CAGTATCGCT
TTTGGTGCCT CTAGTCTCGT TGCTATCTGG GCAAGCTATG GTGAAGTTGC GATTGGATTT
GGGATCTTAA TCTGCTCCTT TGGTGTCATT GCCGGTTACA AGTTAAGAAA CAGCAAATCA
TGGGAGAAAG TACGGGAAGA ATTTGTTATG CCGGATCCTG CCCGCGTCGC AATGAAGCAA
GATAAGCTGG ATCTTGACTG A
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| Protein sequence | MSKINVSHHL SKYLDSGSSV NIRLNIYMNP VNNTKYFFFL GYLALLSMLG FIATDMYLPA
FKAIEDSMQA TPAQVAGSLT CFLAGLAIGQ LLYGPLVQRI GKRNSLLLGL MIFAAASFSL
ASSETVLSFN IARFFQALGA CSAGVIWQAI VIEKYDATKA QSVFSNIMPL VALSPALAPL
LGAFVLEISG WPTIFLILTC LAIFLMLLTV LFVPKEKVTS TAQEGTKKLT YWNLLNNPKY
LGNVIIFGAC SGAFFAYLTV WPIVMEQHGY QAKEIGLSFI PQTIMFIVGG YASKILIRKV
GTEKSLSVLL TCFGLCVVAI VACSLLVKMD SILPLLISFS ILAGANGAIY PIVVNSALQE
FTKHAAKAAG LQNFLQISIA FGASSLVAIW ASYGEVAIGF GILICSFGVI AGYKLRNSKS
WEKVREEFVM PDPARVAMKQ DKLDLD
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