| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2115 |
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| Symbol | |
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| ID | 5609951 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2560368 |
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| End bp | 2562017 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933012 |
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| Product | ABC transporter ATPase |
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| Protein accession | YP_001473852 |
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| Protein GI | 157375252 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.199216 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.196946 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCTAAGTT CCAAACACTT AACTTTTCAG GATATTCCAT TGATTTCTAC CGCAAACATC
ACGATGCAGT TCGGCCCGGA GCCTCTGTTT GAAAACATTT CCGCTAAATT TGGTAATGGC
AACCGCTACG GTTTAATTGG CGCAAATGGT TGTGGTAAAT CCACGTTTAT GAAGATCCTC
AGTGGTGAGC TTGCGCCTAC CTCTGGTAAT GTCTCAATCA CACCAGGCCA AAAGGTCGGC
ACACTAAGCC AGGATCAGTT TGCCTTTGAA GAGTTCAGCG TGATTGACGC CGTCATTCAG
GGCGACGCTA AACTGTGGGA AGTAAAGCAG GAACGTGAGC GGATCTACTC GCTACCAGAG
ATGAGCGAAG AAGATGGCAT GAAGGTAGGT GAGCTCGAAA GCGAATTTGC CGAAATGGAC
GGTTACAGCG CTGAAAGCCG TGCGGGTGAA ATTTTACTCG AAGCCGGTAT CGAAGAAGAG
TTTCACTTTG GCCTAATGAG CCAAGTCGCA CCGGGTTGGA AGCTACGTGT GTTATTGGCA
CAGGCATTAT TCTCAAACCC TGATATATTG CTGCTCGATG AGCCTACCAA CAACCTGGAT
ATTCACACCA TTAACTGGTT GGCCGGTCAG CTAAACAAAC GTAAGTGCAC CATGATCATC
ATCTCTCACG ACAGACACTT TTTAAACACT GTTTGTACGC ATATGGCAGA TATTGATTAC
GGTGAGCTAC GCATCTATCC GGGTAACTAT GAGTACTTCA TGGAAGCCGC AGCCTTAATT
CAAGAGCAGT TACTCGCCGG TAACGCTAAG AAGAGCGCCG AGATGAACGA GCTACAAGAC
TTCGTTAACC GCTTCGGTGC CAACGCATCT AAAGCGAAAC AAGCCAGTTC TCGTGCTAAG
AAGCTCGAAA AAATCTCACT CGATGAGGTT AAGTCGTCTA GCCGTATGAC GCCATCTCTT
AGATTCGACG ATGGTAAGAA GTTACATCGC CAAGCGCTGG TATTGGAAAA TCTGGGTCAC
GGTTTTGACG ATGAGATCTT ATTCGAAGGC GGCGAGCTTA TTCTCGAGGC TGGTGCAAAA
CTTGCTGTTA TCGGTGAGAA CGGTGTCGGC AAATCGACTT TCCTGCGTTG TTTAGTGAAT
GAATTACAAA ACAACCAAGG TGTGGTCAAG TGGTCTGAAA ATGCGTCTAT CGGCTATTGC
CCACAAGACA GCAGCAAAGA TTTTGATAAC GACCTAAACC TATTCGACTG GATGTCCCTG
TGGCGCACAC CTAAGCACAA CGACTTAATG GTCCGTGGCA TGTTAGGCCG CCTCTTGTTC
ACAGAAGATG ATGCCAACAA GAAAGTCAAA AACTGCTCGG GTGGTGAGAA AAACCGCCTG
TTATTCGGCA AGTTAATGAT GATGGACATC AACGTGCTCA TTATGGATGA GCCAACCAAC
CATATGGACA TGGAAGCGAT TGAAGCGTTA AACAACGCAC TAAAGACCTA CCAAGGTACA
CTTATCTTCG TTAGCCACGA CCGTGAGTTT GTATCATCGC TGGCCACGCG AATTATCGAC
GTAAAAGATA AGCGGTTGGT TAACTTCCAA GGTACGTTCA ACGAGTACAT GGCAAGCCAG
CAAGAGATGG AAGCGAGAAA AGTCTCCTAA
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| Protein sequence | MLSSKHLTFQ DIPLISTANI TMQFGPEPLF ENISAKFGNG NRYGLIGANG CGKSTFMKIL
SGELAPTSGN VSITPGQKVG TLSQDQFAFE EFSVIDAVIQ GDAKLWEVKQ ERERIYSLPE
MSEEDGMKVG ELESEFAEMD GYSAESRAGE ILLEAGIEEE FHFGLMSQVA PGWKLRVLLA
QALFSNPDIL LLDEPTNNLD IHTINWLAGQ LNKRKCTMII ISHDRHFLNT VCTHMADIDY
GELRIYPGNY EYFMEAAALI QEQLLAGNAK KSAEMNELQD FVNRFGANAS KAKQASSRAK
KLEKISLDEV KSSSRMTPSL RFDDGKKLHR QALVLENLGH GFDDEILFEG GELILEAGAK
LAVIGENGVG KSTFLRCLVN ELQNNQGVVK WSENASIGYC PQDSSKDFDN DLNLFDWMSL
WRTPKHNDLM VRGMLGRLLF TEDDANKKVK NCSGGEKNRL LFGKLMMMDI NVLIMDEPTN
HMDMEAIEAL NNALKTYQGT LIFVSHDREF VSSLATRIID VKDKRLVNFQ GTFNEYMASQ
QEMEARKVS
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