| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2107 |
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| Symbol | |
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| ID | 5614237 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2549490 |
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| End bp | 2550251 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640933004 |
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| Product | amino acid ABC transporter periplasmic protein |
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| Protein accession | YP_001473844 |
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| Protein GI | 157375244 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.189301 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAGTT TGCGAACCCG GCATCTTACA TTGCTCTTTC TGTTGTTATT TTCACCTCTA
TTTCTTCCCT GTTCGCAAGC TGATGAATAT ACTTTCGCCT CTATTGAGTT TGAACCATTT
GGTTATGTTG AAGATGGGGC CATCAAAGGC ATCATTCCAG ATATTGCAAG AGCCATAGCA
GATGAAGCGA ATATACAGAT TGAGATAACG TTATTACCCT ATTCCCGCGT GGTTAATTAC
ATTAAAAACG GCAACGCTGA CTTTGCCATA TTTAGCCGAA ATTCTGATAA TGATGATGAA
GTTGACTACA TCTCTCTGCT ATTCATACAA AATGTCATCC TGTTAACAAA GAAAGGAAAT
CCACTCCTGA GCCATGAAGA GATCTATGAT CCGGATAAAG TTGCTAGCAT AGGTTACCTC
AGAGGCACTA ATTTTTGTCC CGAAATATTA CTGGACGATA GGCTATCAAC CTTCGAGCTA
AAGGACTTTA CTCAGGGCTT AAAAATGCTG AACTCGAATA GAATTAGTGC GTTTCTGACA
ATTGATAATA CGGCTCTATA TGAAAGCAAA AAACTCGGCC TGCAGTCGTC ATTCGAATTC
CCGGGATTAA GCCTGAAAAC AATCGAAGCC TGGCTACAAG TCCCAAAGCA AGGTTCGACT
GATAATCCGC TCCCGATAGG TAAAATTCGC TCTGCTACAG AGAAACTCAC GACAGAGGGA
AAGGTAGACG AGATATTACA ACAGTATTTA ATAACGAATT GA
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| Protein sequence | MTSLRTRHLT LLFLLLFSPL FLPCSQADEY TFASIEFEPF GYVEDGAIKG IIPDIARAIA
DEANIQIEIT LLPYSRVVNY IKNGNADFAI FSRNSDNDDE VDYISLLFIQ NVILLTKKGN
PLLSHEEIYD PDKVASIGYL RGTNFCPEIL LDDRLSTFEL KDFTQGLKML NSNRISAFLT
IDNTALYESK KLGLQSSFEF PGLSLKTIEA WLQVPKQGST DNPLPIGKIR SATEKLTTEG
KVDEILQQYL ITN
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