| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2090 |
|---|
| Symbol | |
|---|
| ID | 5610467 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2531477 |
|---|
| End bp | 2532595 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640932987 |
|---|
| Product | cobalamin biosynthetic protein CobC |
|---|
| Protein accession | YP_001473827 |
|---|
| Protein GI | 157375227 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0079] Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase |
|---|
| TIGRFAM ID | [TIGR01140] L-threonine-O-3-phosphate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.153409 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTAT TGCATCATGG TGGCTGCCTT CGGGATGTGG CTGAAAAGTA TGGAATCGAC
GAGTCAGACT GGCTGGACCT GTCTACCGGC GTGAGTCCAT GGCACTACCC TGTGCCGGAT
GTTCCGCCGT CGTGCTGGAA TCGATTACCG GAGGAGGAAG ATGGCTTAAT TCCGGCGGCC
GACCGTTATT ATGGCGGCCA CAATGCCTTG CCTGTCGCCG GCTCTCAGGC GGCAATTCAG
TGTCTGCCCC AAGTGCTTGC AGACATGCGC GAAGGTCCCG GCAGAGTATT GCTGCCTAAG
GTGGGGTATA AGGAACATGA AAGGGCATGG CGACTGCGGG GATGGCAGAT AGAATACTAT
GGTAATAATT GTGAGCATGG AGAATGCAAG AAGGGTCATA CAGGTGAGAA TGGTGGCGTT
AATACTTGCG AGAGTAATGA TGTGAGAGTC CCTGAATCTG ACCAACGGCC AACGCCAAAG
CAGATAGACC GATGTGATGT CTTGCTGGTT ATTAACCCCA ATAATCCGGC CGCAGGTCTA
ATCCCTGCAG CTCAACTCAA GGTCTGGTTA GAGGTGTTGT CGGAAAAAGG TGGCTTTCTG
GTTGTCGATG AGGCGTTTAT GGATATGACA CCAGACGCAA GCCTGAACTC AGTCGTTAGC
CCAAATTTGG TCATCTTGCG ATCGATAGGA AAGTTTTTTG GCCTGGCGGG AATCAGAGCT
GGATTCGTCT TTGCATCACA GAGGGTGAGG CTAGCCATGC TGGAACGATT AGGTCCCTGG
TGCCTCAATG GCCCCGCCAG ATTTGTCTGT ACCCGGGCTT TTACCGATAT AGAGTGGCAG
CAGATGCAGA TTAATCGGCT AAACCAATCG AGTGAGCGTT TGTGTCAGTT GTTATCAAGT
CTAGAGGCGC CGGTTGTCGG TACTTCGCTA TTTCAATGCG TCCATCTGTC GAAGGCGCCT
CTGTGGCACG AACGACTGTG TCAACATGGG ATATTGACGC GGTTAACCGA TGAGCGCGAT
GCCCTACGCT TTGGTCTTCC TGCAGATGAA AAACAGTGGG TCAGGCTAAC CGATGTTTTG
CAAACAGTTT TAGCTGAAAT CAAGTTTGAA CAGGCATAA
|
|---|
| Protein sequence | MTLLHHGGCL RDVAEKYGID ESDWLDLSTG VSPWHYPVPD VPPSCWNRLP EEEDGLIPAA
DRYYGGHNAL PVAGSQAAIQ CLPQVLADMR EGPGRVLLPK VGYKEHERAW RLRGWQIEYY
GNNCEHGECK KGHTGENGGV NTCESNDVRV PESDQRPTPK QIDRCDVLLV INPNNPAAGL
IPAAQLKVWL EVLSEKGGFL VVDEAFMDMT PDASLNSVVS PNLVILRSIG KFFGLAGIRA
GFVFASQRVR LAMLERLGPW CLNGPARFVC TRAFTDIEWQ QMQINRLNQS SERLCQLLSS
LEAPVVGTSL FQCVHLSKAP LWHERLCQHG ILTRLTDERD ALRFGLPADE KQWVRLTDVL
QTVLAEIKFE QA
|
|---|
| |