| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2089 |
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| Symbol | |
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| ID | 5610466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2530575 |
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| End bp | 2531480 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932986 |
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| Product | cobD; cobalamin biosynthetic protein |
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| Protein accession | YP_001473826 |
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| Protein GI | 157375226 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1270] Cobalamin biosynthesis protein CobD/CbiB |
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| TIGRFAM ID | [TIGR00380] cobalamin biosynthesis protein CobD |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.284243 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTGGCCTG ATCCCCTCTA TAGTGCCGGT ATCGTCGCAC TGGCTTTAGT GCTCGACAGA
GTATTGGGTG AGATGACTCG TTTTCATCCT TTAGTTGGGC TGGGGCGTTA TGCGGGATGG
GTTAAGCGTA CTCTCTGGCG TCCGACAAAG GTGAGGGGGG TATTGGCGGT GATATTGGTG
TTATTACCGA TATTACCTTT CCTCTGGGCT TCGCGTCTTT GGTGGCTCGA TGCCCTTGTC
CTCTATCTGG TTATCGGTGG TCGCAGCCTG TCTGAGCATG GCAATGCCGT GGGGCAGGCG
CTACAACATG GCGATCTAGA TTTGGCAAGG AAGAAGGTCG GTATGATTGT CAGCCGTAAG
ACTGAAAACT TGACCGAACA ACAGGTTGTC AATGCGACCC TTGAATCGGT ACTGGAAAAT
GGCAACGATG CACTGTTCGG CGCACTATTT TGGTTTTGTG TCGCCGGATT ACCCGGTGCG
CTGGTGTATC GGTTTAGTAA TACCTTAGAC GCCATGTGGG GTTATAAAAA CCAGACCTAT
CTTCACTTTG GGTGGGGAGC GGCAAAATTT GACGACCTGT TAAATTATAT CCCTGCACGC
CTATGTGCAT TGGCTTATGC ACTGGGAGGT AACGTCACAC TCGCACTGAG TTGCTGGCGT
GAGCAGGCAC CTCAATGTGC CAGTCCCAAC GGTGGTGTCG TGATGGCCGC CGGAGCTGGC
AGCCTGAATA TTACTATGGG AGGCGCGGCC GAATATGATG GTTATCGCTG TGATAAACCT
CTGCTTGGTT CAGGCAGACC GGTTCAAGCC GGCGATATTC CACGAGCGTG TCGTCTCGTA
TGGTTAAGTG CTGTCTATTG GCTTGCACTG TTATTGATAT TGGCTTTATT TGAGAGAGTG
TTATGA
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| Protein sequence | MWPDPLYSAG IVALALVLDR VLGEMTRFHP LVGLGRYAGW VKRTLWRPTK VRGVLAVILV
LLPILPFLWA SRLWWLDALV LYLVIGGRSL SEHGNAVGQA LQHGDLDLAR KKVGMIVSRK
TENLTEQQVV NATLESVLEN GNDALFGALF WFCVAGLPGA LVYRFSNTLD AMWGYKNQTY
LHFGWGAAKF DDLLNYIPAR LCALAYALGG NVTLALSCWR EQAPQCASPN GGVVMAAGAG
SLNITMGGAA EYDGYRCDKP LLGSGRPVQA GDIPRACRLV WLSAVYWLAL LLILALFERV
L
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