| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2075 |
|---|
| Symbol | |
|---|
| ID | 5614246 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2513731 |
|---|
| End bp | 2514756 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640932972 |
|---|
| Product | cation diffusion facilitator family transporter |
|---|
| Protein accession | YP_001473812 |
|---|
| Protein GI | 157375212 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1230] Co/Zn/Cd efflux system component |
|---|
| TIGRFAM ID | [TIGR01297] cation diffusion facilitator family transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.055062 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGCA AGTCTCACTC CATTCAGGCC TGGCAACACC AGCACCAGTT TGCCAATATC
AACAATGATG GCGAGCGTAA TACCCGCTAT GTGCTGTACC TCACCTTGAT CACTATGATT
GCGGAGATCG CGGCCGGTAC AATCTATGGT TCAATGGCGT TACTGGCCGA CGGCTGGCAT
ATGGGGACAC ATGCGGCGGC ATTTATGATC ACGCTATTTG CGTATCGTTA TGCCAAAAAA
CACGCCAACA ATCCGAATTT TACTTTTGGT ACCGGAAAGG TCAGCGTCCT CGGTGGCTTT
ACCAGCGCTA TCGCCTTAGG ACTCGTGGCT CTGATCATGT TGGTAGAGTC TGGTGTACGA
ATATTTAATC CGCAGCAGAT CCAATTTAAT GAAGCGATCA TGGTTGCCCT GATAGGATTG
ACTGTCAATG TGATCAGTGT ATTTCTGCTA AAAGATCACC ATAGTCACGA CCATGGACAT
GGCCACGATC ATGGACACTC TCATAGTCAT CATGAGCATT CTCACTGCCA TCATGAGCAT
ACTGAAGCAC ACTCAGATCA TGAGAATGAT TCATCGAAAG AGGGGCATCA TGATCATAAC
TTGCGTGCGG CTTACTTTCA TGTCCTCGCC GATGCGTTAA CCTCAATATT GGCGATCTGT
GCACTCTTGT TGGGTAAACT TTACGGCTTG AATTGGTTGG ATCCCGTGAT GGGTATAGTC
GGTTCGGTGA TTATCAGTCG TTGGGCGTGG AACCTGTTAA GGCAGACTGC ACCTATCTTG
TTAGACACCA GCATCGAAGA TAAGTATAAA AACAAGATAG TGGCAGAGAT AGAGTCGGTG
GAGGATCATC AGATTGCCGA TCTGCACATC TGGCGTGTCA GTGCAGATCA TTATGCGGTT
GCGTTATCGT TAGTGTCCCA TAAGCCTAAA GACGCCGACT ATTTTAAGTC TAAACTTAAG
AAATTTGATC GCTTGAGCCA TTTGACCATT GAACTCAATA CCTGTCGTCA GGCAGAATGC
ACTTAA
|
|---|
| Protein sequence | MNSKSHSIQA WQHQHQFANI NNDGERNTRY VLYLTLITMI AEIAAGTIYG SMALLADGWH
MGTHAAAFMI TLFAYRYAKK HANNPNFTFG TGKVSVLGGF TSAIALGLVA LIMLVESGVR
IFNPQQIQFN EAIMVALIGL TVNVISVFLL KDHHSHDHGH GHDHGHSHSH HEHSHCHHEH
TEAHSDHEND SSKEGHHDHN LRAAYFHVLA DALTSILAIC ALLLGKLYGL NWLDPVMGIV
GSVIISRWAW NLLRQTAPIL LDTSIEDKYK NKIVAEIESV EDHQIADLHI WRVSADHYAV
ALSLVSHKPK DADYFKSKLK KFDRLSHLTI ELNTCRQAEC T
|
|---|
| |