| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2066 |
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| Symbol | |
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| ID | 5614117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2501969 |
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| End bp | 2502604 |
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| Gene Length | 636 bp |
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| Protein Length | 211 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932963 |
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| Product | TetR family transcriptional regulator |
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| Protein accession | YP_001473803 |
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| Protein GI | 157375203 |
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| COG category | [K] Transcription |
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| COG ID | [COG1309] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.612632 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000107098 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAAATA GATCCGATAC TAAAACAAGA ATACTGGATG CTGCAGAAAA GTTATTTGCA
GAAAGAGGCT TTTCTGAAAC CTCATTACGT CTGATTACCA GTAAAGCCGA GGTCAATTTG
GCTTCAGTTA ATTACCATTT TGGTTCAAAA AAAGAGTTGA TACGTGCCGT ATTGGCCCGG
TATCTCGATG TCTTTATGCC GGTTGCTTCG GCCGAAATCG TCAGACTGCA GGCATCGGAT
AAAAATGCCT CACTCAATGA TATCTTTTCT ATCTTAGTTG AGCCTCTTCT GGATCTGAAT
AAAGTAAGAG CCGAAGGTAC AAGCACCTTC TTGCAGCTTT TGGGCCGTGG CTACATTGAG
AGTCAGGGCC ATCTGCGCTG GTTTATCACG ACTCATTATG GCGAACATTT AGATCAGTTC
GTGAAAGCGG TTGCCGCAAG CGCACCCCAT ATTCCCCCCG CTGAGATGTT TTGGCGTTTA
CACTTTACCT TAGGTACGGT CGTATTCACT ATGGCTTCGG CAGATGCTCT GATTGAGATA
GCCGGAGCCG ATTTTGGTGA GCAAAACAAT ATAGAAACGG TTATTCGTAA AGTGATCCCA
TACCTCTCTG CCGGTGTGTC AGTTCCTGTT AATTAA
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| Protein sequence | MANRSDTKTR ILDAAEKLFA ERGFSETSLR LITSKAEVNL ASVNYHFGSK KELIRAVLAR
YLDVFMPVAS AEIVRLQASD KNASLNDIFS ILVEPLLDLN KVRAEGTSTF LQLLGRGYIE
SQGHLRWFIT THYGEHLDQF VKAVAASAPH IPPAEMFWRL HFTLGTVVFT MASADALIEI
AGADFGEQNN IETVIRKVIP YLSAGVSVPV N
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