| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2021 |
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| Symbol | |
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| ID | 5614049 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2445314 |
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| End bp | 2446213 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932907 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001473758 |
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| Protein GI | 157375158 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.58425 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAGAG CCAAATCAAC ACTCGAACAA TGGCGTACAT TACAAGCGGT CGTCGATTAT
GGCGGCTATT CGCAAGCAGC AGCTAAACTC AATAAGAGTC AATCCTCGCT GAATCATGCA
GTGGCAAAAC TCCAGGCGCA ATTAGGTATA GAACTGCTAG AAGTCAAAGG TCGAAAAGCC
TATCTCACCG AACAAGGCGA AGTACTCTTG AGACGGTCAC GCCACATCAC TAAATCAGTG
GCAGAACTCG AATTACTCGC AAATAATTTG GAGAATGGCT GGGAGCCGAG TCTCACCATT
GCAAGAGAGA TCATCTATCC GATGGACAAG CTGGTCGATG CATTATCGGA CTTCCTGCCA
GAGAGCCGGG GGACACGCAT AACGATTGTC GACTCCGTTA TCACAGGCAC ACATGAGCTG
ATTAAAGATC AACTCGTCGA TATTGCAATC TCTGGCGGTG TTGCACCTAA AGGCGTTCTC
AGTGAACCCT TATGCGAGTT AGATTTTTTA TTAGTCTGCC ACCCGGAACA TCCATTGGCC
AGTGAACCTA ATATTGAAGA TGATCTGACA TTAGCCCAGC ACCTTCAAAT CGTGATTAAA
GACACCGGGC AGGGATCTAA TATCGATCTT GGCTGGCTAA AGGCTGAACA GAGGTGGACC
GTCTCAAATT TCCATGAAGC GTTAGCCATA CTAAACCGCA ATATCGGTTT TTGCTGGGTC
CCGAAGCACT TAGTGGACTC ATTAATCGAA ACAGGAGAAT TAAGTCAACT CAGCCTCAAG
GGAAGTAGCC ATAAAAAGGT CATGATGAGT CTGATCATCC CCAACAGAGA CAGGCAAGGT
CCGGCAAGTG AGCGGCTAGA GCAATTGATT ATGGAACAGC ATTGCAAGAA TGAAAATTAA
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| Protein sequence | MDRAKSTLEQ WRTLQAVVDY GGYSQAAAKL NKSQSSLNHA VAKLQAQLGI ELLEVKGRKA
YLTEQGEVLL RRSRHITKSV AELELLANNL ENGWEPSLTI AREIIYPMDK LVDALSDFLP
ESRGTRITIV DSVITGTHEL IKDQLVDIAI SGGVAPKGVL SEPLCELDFL LVCHPEHPLA
SEPNIEDDLT LAQHLQIVIK DTGQGSNIDL GWLKAEQRWT VSNFHEALAI LNRNIGFCWV
PKHLVDSLIE TGELSQLSLK GSSHKKVMMS LIIPNRDRQG PASERLEQLI MEQHCKNEN
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