| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2006 |
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| Symbol | def |
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| ID | 5612152 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2426911 |
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| End bp | 2427402 |
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| Gene Length | 492 bp |
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| Protein Length | 163 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932892 |
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| Product | peptide deformylase |
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| Protein accession | YP_001473743 |
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| Protein GI | 157375143 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0958745 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000967888 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCTGTAC TGGATATTCT GACAATCCCC GATGAACGTT TAAAAAGAAA AGCTCAACCT
GTTAAGGATA TCGAGTCGGT ACAAGGTTTT ATTGATGATC TGCTGGACAC CATGTATGAC
ACCGAAGACG GTATCGGCTT GGCAGCGACT CAGGTGGGCA GTCTACATGC CATCTTAGTC
ATAGACTTGT CACCAGAGCG AGATCAGCCT CAAGTGCTTA TCAACCCTGA AATTATCGAA
GCAGAAGGGG ACTTTGTCGG TGAAGAGGGG TGTTTGTCTA TTCCCGGCTA CAGAGCAAAA
GTCACCCGAA GTGAAAAAGT TAAGATAAAA GCATTAGACC GTACCGGAAC ACCCTTCGAG
ATCGAAACCG ATACCTTCCT GGCCATAGTG ATACAGCATG AGATGGAGCA TCTTCAAGGC
GTCGTATTTA CCGATCACCT GTCTAAACTT AAACAACAGA TAGCCTTAAA GAAGGTTAGC
AAGTATAAGT AA
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| Protein sequence | MAVLDILTIP DERLKRKAQP VKDIESVQGF IDDLLDTMYD TEDGIGLAAT QVGSLHAILV
IDLSPERDQP QVLINPEIIE AEGDFVGEEG CLSIPGYRAK VTRSEKVKIK ALDRTGTPFE
IETDTFLAIV IQHEMEHLQG VVFTDHLSKL KQQIALKKVS KYK
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