| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2005 |
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| Symbol | |
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| ID | 5611463 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2424950 |
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| End bp | 2426671 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932891 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001473742 |
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| Protein GI | 157375142 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3104] Dipeptide/tripeptide permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.685164 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000601576 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCACAAG TAAAACGTAC GCCTTTGCCG AAAACTTTCT TCGTTGCTAA TACGATGGAG
ATATTTGAAC GTCTTGCCTG GTATGGATTT TTTACCCTGT CGTCACTCTA TATGACCTCT
CCGGCTCGTC AGGGAGGATT AGGTTTCACT GAACAGGAAC GTGGACTTCT TCAGGGAATG
ATCCCATTTT TCCTCTACCT CTTCCCGGTA TTAACTGGCG CGTTGGCCGA CCGCTATGGT
TACCGCAAGA TGTTTTTGAC CGCCTACCTC ATCATGTGTC CAAGCTATTT TATTCTGGGA
CAGGTCGACT CATTCGCCGG CTTCTTTATC GCTTTTATGG GCGTCGCATT AGGCGCAGCC
TGTTTTAAGC CCGTTGTCAC GGGCACGATT GCACGCACGA CCGATGAAAC CAACCGAGGA
CTGGGTTTCG GGATATTCTA TATGATGGTT AACATAGGTG GGTTTCTGGG CCCCTTTATT
GCCGGATACG TTCGGGCTAT CAGCTGGGAT TGGGTATTTA TCATGTCGTC ATTCTGGATA
GCGGTAAACT TCATCCCTGC TTTGCTTTTT TATAAGGAGC CTACCGATCC TAAAGCACAA
AAAGGAAAAC CATTAAGCGC GGTATTTGCA GACATTCAGC AAGTGTTGGG GAATGTACGT
TTTGCTATGC TATTTTTTGG CACCTTAGTC ATACTGATGT CTTATGGCGC AAAGTGGATA
ACGGGAGAAA CAACGTTAAT CATCTATTTC GTCTGGTTTA TCGGGCATTT CCTGTGGGAT
CTGACGGCCA AAACAAACCT GAAATCCCCC TGGTACAGAC AGAAGATCAG CTTAGGAAAC
AAACCCTTCG TTATCTACCT TCTGATCTTG TCAGGCTTTT GGATGGTGTA TCAACAGATA
TTTATCACCC TGCCAATCTT CATTCGTGAT TTTGTCGATA CTTCGGATCT GGTGATGATG
TTGGGCCAAT ATCCTGATCT TTTATCTTTT TTAGCTCCTG TAGACACTCA CACACTACAG
ACTGAGCTCG TCAGACTCTC TCAGGCGGTT GCCGCCAATG AGGTTGACAT TAATCAGGCC
TATTTCGAAC TGGTCCACTC CAAGGTAATG GTTCCCTTAA CCGAATTGAA TATCGGTCTA
GCTGCCATCT CGCAAGATCC ATCAACTGCC GTCGACTATT CACAAACCTG GACTGCGCAA
CACAGACAGA TAAATCCTGA GTACCTGATT GGGTTGAACT TCCTCTCAAT TGTTCTACTT
CAAGTGATGA TCAGTCGCTT TATCGAACGC TTTCAAGCAC TACCCATTTT AGTTGCCGGT
ACCATTATTA TATCTTTGGG TACAGCACTC GGTGGGGTTG CTCACGGAAT GATAATGGGC
GGCTTTATGG TGCTGACATC CATTTTGGTC TTCTCTGTCG GCGAAATGGT TGCCTCACCA
AAGAGTCAGG AGTACGTGGC AAGTTTTGCA CCCAACGACA AGAAAGCCAT GTTTATGGGT
TATTACTTTG TCTCCTCAGC GATCGGTTTT TTACTTGCAG GTCCTCTATC GGGTTACCTT
TATTCGGAAG TGGCAAAGAA TGCCCATCGC CCCGATCTTA TGTGGTACAT CATAGGCGGC
TTTGGCTTAG TCACCGCTTT AGGTTTAGTC CTGTTTCATA AATTTGGTGC AACTCAATCG
CAAGATATTG AGCTGCAACA GGAGACAATA GAGGTGACAT AG
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| Protein sequence | MSQVKRTPLP KTFFVANTME IFERLAWYGF FTLSSLYMTS PARQGGLGFT EQERGLLQGM
IPFFLYLFPV LTGALADRYG YRKMFLTAYL IMCPSYFILG QVDSFAGFFI AFMGVALGAA
CFKPVVTGTI ARTTDETNRG LGFGIFYMMV NIGGFLGPFI AGYVRAISWD WVFIMSSFWI
AVNFIPALLF YKEPTDPKAQ KGKPLSAVFA DIQQVLGNVR FAMLFFGTLV ILMSYGAKWI
TGETTLIIYF VWFIGHFLWD LTAKTNLKSP WYRQKISLGN KPFVIYLLIL SGFWMVYQQI
FITLPIFIRD FVDTSDLVMM LGQYPDLLSF LAPVDTHTLQ TELVRLSQAV AANEVDINQA
YFELVHSKVM VPLTELNIGL AAISQDPSTA VDYSQTWTAQ HRQINPEYLI GLNFLSIVLL
QVMISRFIER FQALPILVAG TIIISLGTAL GGVAHGMIMG GFMVLTSILV FSVGEMVASP
KSQEYVASFA PNDKKAMFMG YYFVSSAIGF LLAGPLSGYL YSEVAKNAHR PDLMWYIIGG
FGLVTALGLV LFHKFGATQS QDIELQQETI EVT
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