| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1997 |
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| Symbol | |
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| ID | 5612847 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2414974 |
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| End bp | 2416587 |
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| Gene Length | 1614 bp |
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| Protein Length | 537 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932883 |
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| Product | peptidase M28 |
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| Protein accession | YP_001473734 |
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| Protein GI | 157375134 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2234] Predicted aminopeptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.801062 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000223343 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATAGTA GAAATATCTT GTTAATGACG TTCTTTTCAA CGTTATTTTT AACGGCATGC
GGGCAACAAG TATCAAAAGT GCCAGCCACA GAAGTGAACC TAGATAATGC TCATCGCCAT
ATAAAAATAC TGGCTTCCGA TGAATTTGCG GGTCGAGGAC CACTGACTGA AGGGGAAAGA
GTCACCATTG ATTATTTGGC GAAACAATAT CGCGAAATAG GATTAACCGG GGGCAATAAA
GGAAGTTTCT TCCAAACCGT CCCCATGGCC AAGCTCACCT CAGATCAGTC CATGCTTTTA
ACCATTGGTG ATCTTGAGTT TCAGGCGGGA AAAGATTTCA CCGCCCGTAC TCAGCAGATG
AATACAGATA TCAAACTCAA TGATTCGCAG GTGGTATTTG TTGGGTACGG CATCAATGCC
CCTGAATATC AGTGGAATGA TTATCGTGAC ATTGACGTAA CAGATAAAAC GGTCATTGTT
TTAGTCAATG ATCCAGGCTT CGCGACACAA GACGATAATC TATTTACCGG CAACGCCATG
ACCTATTATG GACGTTGGAC CTATAAGTAT GAGGAAGCGG CCAGACAAGG GGCAAAAGCG
GTATTGATAG TCCATGAAAC AGCCCCTGCC GCCTATCCAT GGAGTGTTGT AGAGAGCTCA
AACACTGGCA GCAAATACAC CTTAGTAGAC GATGAGAATA ACAAGAGTAA GCTGCCAATC
ATGGGCTGGT TACAGCATGA AGCCACGAAA CAGGTTTTTG CTCAAGCGGG TCTGGATTTT
GACACATTAA AACACCAGGC TATCAGCCGT AACTTTAAGC CTATTCCTTT TAAGCAAACT
GCCAGGTTAA ACCTGACAAC GGCCATTGAA CATGCAGAGT CAAACAATGT TCTTGCGTTA
ATTAAAGGCA GCAAAAGGCC CGATGAAACC ATTATCGTCA GTGCCCATTG GGATCATTTT
GGTACACAAC AAACACCTGA GGGTCCCAAA ATTTATAATG GCGCCATCGA TAATGCCACC
GGTGTGGCGG GCACACTGGA AATTGCACGC ATACTGATGG AGCGCCACAA AATTAAGCCG
TTTGAGCGTT CAATTCTCTT TGCCAATTTT ACCGCAGAGG AAACGGGCAT GATTGGGTCC
GAACTCTTTG CTCGTGGCAC CGTTTTACCC ACTAAAAACA TCGTAGGCTT ACTGAATATC
GATGGTATGA ACGCCTTAGA CGGAGTCGAC TATGTATTAC AATATGGCAA AAACATGTCA
GAACTTGAGG GGTATCTGCA AAAGGCGGCC AGTAAACAGC AACGACACGT TAAGCTCGAT
CCAAGACCGC AAAACGGCCT CTTCTTTCGT TCCGACCACT TCTCATTAGC TAAACAAGGA
GTTCCAGGTT TACTGTTTAT GAGTCTGGGG GATACCGATC CTGACTATAT CAGTCACAGA
TACCATAAAG AGGCCGACGA CTATTCAGTT TCCTGGTCAT TAGGTGGCAT GCAACAGGAG
ATCGCCTTGA TTGTCGATAT CGCCAGTGAG CTGGCGACCA ACGATGATTG GCCTAAGTGG
AAAGCCGATT CTGACTTTAA GAAGCGCAGA GCCGAAGACA TGAGCAAGAT GTAA
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| Protein sequence | MNSRNILLMT FFSTLFLTAC GQQVSKVPAT EVNLDNAHRH IKILASDEFA GRGPLTEGER
VTIDYLAKQY REIGLTGGNK GSFFQTVPMA KLTSDQSMLL TIGDLEFQAG KDFTARTQQM
NTDIKLNDSQ VVFVGYGINA PEYQWNDYRD IDVTDKTVIV LVNDPGFATQ DDNLFTGNAM
TYYGRWTYKY EEAARQGAKA VLIVHETAPA AYPWSVVESS NTGSKYTLVD DENNKSKLPI
MGWLQHEATK QVFAQAGLDF DTLKHQAISR NFKPIPFKQT ARLNLTTAIE HAESNNVLAL
IKGSKRPDET IIVSAHWDHF GTQQTPEGPK IYNGAIDNAT GVAGTLEIAR ILMERHKIKP
FERSILFANF TAEETGMIGS ELFARGTVLP TKNIVGLLNI DGMNALDGVD YVLQYGKNMS
ELEGYLQKAA SKQQRHVKLD PRPQNGLFFR SDHFSLAKQG VPGLLFMSLG DTDPDYISHR
YHKEADDYSV SWSLGGMQQE IALIVDIASE LATNDDWPKW KADSDFKKRR AEDMSKM
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