Gene Ssed_1988 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1988 
Symbol 
ID5612821 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2404695 
End bp2406254 
Gene Length1560 bp 
Protein Length519 aa 
Translation table11 
GC content48% 
IMG OID640932872 
Productlytic transglycosylase, catalytic 
Protein accessionYP_001473725 
Protein GI157375125 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.010206 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00147511 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGCATAC AAACTATTGT AATTGCAGGG AGTCTCTCCC TGCTTTCGGC CTGTCAGTCA 
CTTGACACCC CGGCTCCCGA AGCCGCTCAA AGCCAAAACA TCAACCCGAT CACAACTCCA
ATCACGAGCA AGAACTCAGA AACCTCTCCA AAAGTTGAAG TTGTCGAGAT CACAGATGTC
TGGGAACGAA TTCGTCTTGG ATTAGCGCTA CCGGTTCCCG AGCACAAATT AGTGAAGCAA
TACCGGGAAT GGTATATCAA GCACCCTCAA CATCTTGCCA GAGTGTCTGA GCGGGCCACA
CCATTTCTCT ACCTGATTGT CGAAGAGATA GAAAAACGCG ATCTCCCCAT CGAGCTGGCA
CTGCTACCCA TAGTCGAAAG TGCATTCGAT CCTTTTGCCT ATTCCCATGG TGCAGCCTCA
GGTTTGTGGC AATTTACCTC CCCGATGGCG AAGCATTTTG GTCTGCAGAT GAACTGGTGG
TATGACGGTC GCAGGGATGT TCCGGCCGCA ACGGTGGCTG CATTGGATAT GCTCGAATAT
CTGTATAAGA AAACCCATGG AAACTGGCTC TACGCCATTG CAGCCTACAA CACCGGCGAA
GGCCGTGTCA GAAACGCTGT TAAAAGAAAC AAGAAAAATG GCAAGCCGAC CGATTTTTGG
TCACTGGATC TGCCAACGGA AACAGAGCGA TACGTACCAC AGCTTCTTGC CTTAGCCGAT
GTTATTCAAA ACGCCGAGAA ATATGGCATT AAGCTAAGTC CGATTGATAA TGAACCTATT
ATTGAAGTCG TCAATGTAAA GGGTCAGATA GATTTAGCCT TGGCTGCTGG CTTTGCCAAT
ATGACAACCT CAGAATTACA TAAGCTCAAC CCCGGATACA ACCGCTGGTC TACGGCACCG
GAAGGGCCAC ATAATTTAGT TCTACCGGTT GACAGAGTAT TAGGATTCAA CCTTGCTTTG
GCTGATACAG ACGCCGAAGA GAGACTAAAC TGGGAACGTT ATCAGATAAA ATCCGGAGAT
AGCCTGGGGC TTATCGCTAA ACGATATCGA ACCACTCCCT CTGCACTGCG CGCCGTTAAC
GATATCAAGG GAAATACCAT TATCGCCGGC AAGCACCTGT TGATCCCCGT GGCAGCTAAG
AACCCTGAGC AATATGCCCT CTCTTTAGGG CAGAGACAGA TCTCAAAGCA AAATGTTAAA
CGTGGCAGCC AAAAGATCAC CTATCGAGTC CGCTCCGGTG ACTCTCTGTG GAAAATAGCC
AAAGCCCATA AGGTTAAGGT ATCTCAACTC GCCAGCTGGA ACAGCATGGC ACCTAAAGAT
CAACTAAAAA TAGGGAAAAA GCTGGCAATC TGGACCGGAA ACAATAAGCA GAGTTCATCC
TCTATTACAC GTAAGGTCAA TTACACCGTA CGTTCCGGAG ATTCCCTCGC TCGTATTGCT
TCAAAATTTA AAGTCAGAAT CAACGATCTC GTGCGTTGGA ACTCACTCGA AAAGAGCAAA
TATATTCAAC CGGGACAAAA GTTGAAGTTA TATGTTGATG TCACCAACGT CCGGGCCTAA
 
Protein sequence
MRIQTIVIAG SLSLLSACQS LDTPAPEAAQ SQNINPITTP ITSKNSETSP KVEVVEITDV 
WERIRLGLAL PVPEHKLVKQ YREWYIKHPQ HLARVSERAT PFLYLIVEEI EKRDLPIELA
LLPIVESAFD PFAYSHGAAS GLWQFTSPMA KHFGLQMNWW YDGRRDVPAA TVAALDMLEY
LYKKTHGNWL YAIAAYNTGE GRVRNAVKRN KKNGKPTDFW SLDLPTETER YVPQLLALAD
VIQNAEKYGI KLSPIDNEPI IEVVNVKGQI DLALAAGFAN MTTSELHKLN PGYNRWSTAP
EGPHNLVLPV DRVLGFNLAL ADTDAEERLN WERYQIKSGD SLGLIAKRYR TTPSALRAVN
DIKGNTIIAG KHLLIPVAAK NPEQYALSLG QRQISKQNVK RGSQKITYRV RSGDSLWKIA
KAHKVKVSQL ASWNSMAPKD QLKIGKKLAI WTGNNKQSSS SITRKVNYTV RSGDSLARIA
SKFKVRINDL VRWNSLEKSK YIQPGQKLKL YVDVTNVRA