| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1988 |
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| Symbol | |
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| ID | 5612821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2404695 |
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| End bp | 2406254 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932872 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_001473725 |
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| Protein GI | 157375125 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1388] FOG: LysM repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.010206 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00147511 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGCATAC AAACTATTGT AATTGCAGGG AGTCTCTCCC TGCTTTCGGC CTGTCAGTCA
CTTGACACCC CGGCTCCCGA AGCCGCTCAA AGCCAAAACA TCAACCCGAT CACAACTCCA
ATCACGAGCA AGAACTCAGA AACCTCTCCA AAAGTTGAAG TTGTCGAGAT CACAGATGTC
TGGGAACGAA TTCGTCTTGG ATTAGCGCTA CCGGTTCCCG AGCACAAATT AGTGAAGCAA
TACCGGGAAT GGTATATCAA GCACCCTCAA CATCTTGCCA GAGTGTCTGA GCGGGCCACA
CCATTTCTCT ACCTGATTGT CGAAGAGATA GAAAAACGCG ATCTCCCCAT CGAGCTGGCA
CTGCTACCCA TAGTCGAAAG TGCATTCGAT CCTTTTGCCT ATTCCCATGG TGCAGCCTCA
GGTTTGTGGC AATTTACCTC CCCGATGGCG AAGCATTTTG GTCTGCAGAT GAACTGGTGG
TATGACGGTC GCAGGGATGT TCCGGCCGCA ACGGTGGCTG CATTGGATAT GCTCGAATAT
CTGTATAAGA AAACCCATGG AAACTGGCTC TACGCCATTG CAGCCTACAA CACCGGCGAA
GGCCGTGTCA GAAACGCTGT TAAAAGAAAC AAGAAAAATG GCAAGCCGAC CGATTTTTGG
TCACTGGATC TGCCAACGGA AACAGAGCGA TACGTACCAC AGCTTCTTGC CTTAGCCGAT
GTTATTCAAA ACGCCGAGAA ATATGGCATT AAGCTAAGTC CGATTGATAA TGAACCTATT
ATTGAAGTCG TCAATGTAAA GGGTCAGATA GATTTAGCCT TGGCTGCTGG CTTTGCCAAT
ATGACAACCT CAGAATTACA TAAGCTCAAC CCCGGATACA ACCGCTGGTC TACGGCACCG
GAAGGGCCAC ATAATTTAGT TCTACCGGTT GACAGAGTAT TAGGATTCAA CCTTGCTTTG
GCTGATACAG ACGCCGAAGA GAGACTAAAC TGGGAACGTT ATCAGATAAA ATCCGGAGAT
AGCCTGGGGC TTATCGCTAA ACGATATCGA ACCACTCCCT CTGCACTGCG CGCCGTTAAC
GATATCAAGG GAAATACCAT TATCGCCGGC AAGCACCTGT TGATCCCCGT GGCAGCTAAG
AACCCTGAGC AATATGCCCT CTCTTTAGGG CAGAGACAGA TCTCAAAGCA AAATGTTAAA
CGTGGCAGCC AAAAGATCAC CTATCGAGTC CGCTCCGGTG ACTCTCTGTG GAAAATAGCC
AAAGCCCATA AGGTTAAGGT ATCTCAACTC GCCAGCTGGA ACAGCATGGC ACCTAAAGAT
CAACTAAAAA TAGGGAAAAA GCTGGCAATC TGGACCGGAA ACAATAAGCA GAGTTCATCC
TCTATTACAC GTAAGGTCAA TTACACCGTA CGTTCCGGAG ATTCCCTCGC TCGTATTGCT
TCAAAATTTA AAGTCAGAAT CAACGATCTC GTGCGTTGGA ACTCACTCGA AAAGAGCAAA
TATATTCAAC CGGGACAAAA GTTGAAGTTA TATGTTGATG TCACCAACGT CCGGGCCTAA
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| Protein sequence | MRIQTIVIAG SLSLLSACQS LDTPAPEAAQ SQNINPITTP ITSKNSETSP KVEVVEITDV
WERIRLGLAL PVPEHKLVKQ YREWYIKHPQ HLARVSERAT PFLYLIVEEI EKRDLPIELA
LLPIVESAFD PFAYSHGAAS GLWQFTSPMA KHFGLQMNWW YDGRRDVPAA TVAALDMLEY
LYKKTHGNWL YAIAAYNTGE GRVRNAVKRN KKNGKPTDFW SLDLPTETER YVPQLLALAD
VIQNAEKYGI KLSPIDNEPI IEVVNVKGQI DLALAAGFAN MTTSELHKLN PGYNRWSTAP
EGPHNLVLPV DRVLGFNLAL ADTDAEERLN WERYQIKSGD SLGLIAKRYR TTPSALRAVN
DIKGNTIIAG KHLLIPVAAK NPEQYALSLG QRQISKQNVK RGSQKITYRV RSGDSLWKIA
KAHKVKVSQL ASWNSMAPKD QLKIGKKLAI WTGNNKQSSS SITRKVNYTV RSGDSLARIA
SKFKVRINDL VRWNSLEKSK YIQPGQKLKL YVDVTNVRA
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