| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1976 |
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| Symbol | |
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| ID | 5611873 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2388741 |
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| End bp | 2389979 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932860 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001473713 |
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| Protein GI | 157375113 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.912402 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTAA ATAAACTGAC TTTGATTATC ACTGTAATAT CTGCAATAAG TATTTTTGGC
GCAATAGCCT ATAACGGAGA AAAATCCGAA CAAGCGTTAG AAGCAGAACG TAGTGTGGTA
TCAACCGTTA CCGTAGCCGC ACCAGAGGTG GCAATAGTTA ATGTAGAGCC CAAAAGCTAC
CTTGCGAGTG TGACGGGTCA CGGTGAAGCT TTGCCGAGAT ATCAATTGGC TTTAAGTAGC
GAAGTGAGTG GGCGGGTTGA TAAACTCAAT GGTAATTTCG TGACAGGTCA ACAGGTCAAA
CAGGGGGATA CATTAGCTTA TATAAATGAC ACTCTGTATT TAGAAGCCGT TGCTAATGCC
AAGCTCTCAG TTGCTGATGC CAAGTTAGCT TTACTTGAAG AAGAGCGACA AGTTGTCCAA
GCAAAATTAG AGTGGCAACG CTCTGGTGTT ACGGGTGAAC CTGCATCGCC TTTAGTGTTG
CGATCGCCGC AACTTGATGC AGCAAAAGCC AAGCTCGATA AGGCAATGAG TGAACTGAAA
GTCGCAAAGC AAAATTTAAG TAAAACAAAG ATTCTTGCTC CTTTTGATGC TCTAATTGTT
AGTACAGAAA TTCAGCCTGG TAGCTATGTA CAGGCAGGAA CACAATTAGC AGAGTTATAC
AGTACCGATC GTATTGAAGT AACAGTTCCA TTGTCAGAAT ATCAGTGGCA AAACCTACCT
CCGGTAAGCA CCTTGGGAGA TAAATCTTGG CCAGTCACAC TGACTGACTC TAATGGCCTA
AAGCACTGGC AAGGCTTTGT CGGTAGAGTA GAAAATCACT TTGATAATAC GAGTCGTCAA
CGTGCACTTG TTGTCATCGT CGAACGTCCA TTAGCACTTG CTACACCGCT ATTGCCTGGC
ACCTTTGTTG AAGCGCTTAT TCAAGGAAGA AGCCTGAGCA ATATGTGGCA GTTACCTGCA
TCTGCGGTAT CTCAGTCGAG TGATATCTGG ATTGTTAATG CCGAGAATAA ACTCAACAGT
CATAAAGCCA ACAAGGTATT CGAGAAGGGT GAGTGGATCT ATTTACAACC ACTGCTCTCA
CAGTCATCGG CAAATGTCGT CGTAAGACCG CTGAATAGTT ATGTATCAGG CACTTTTGTG
ACACCCAAAA CTGAGATACT TATTGGTAGT AGTCTTTATT CTCAAGATAT AGAAGCACTT
GAAGAGATTG CTCAAAGTCA TAGTGAGGTG AGCAGATAA
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| Protein sequence | MKLNKLTLII TVISAISIFG AIAYNGEKSE QALEAERSVV STVTVAAPEV AIVNVEPKSY
LASVTGHGEA LPRYQLALSS EVSGRVDKLN GNFVTGQQVK QGDTLAYIND TLYLEAVANA
KLSVADAKLA LLEEERQVVQ AKLEWQRSGV TGEPASPLVL RSPQLDAAKA KLDKAMSELK
VAKQNLSKTK ILAPFDALIV STEIQPGSYV QAGTQLAELY STDRIEVTVP LSEYQWQNLP
PVSTLGDKSW PVTLTDSNGL KHWQGFVGRV ENHFDNTSRQ RALVVIVERP LALATPLLPG
TFVEALIQGR SLSNMWQLPA SAVSQSSDIW IVNAENKLNS HKANKVFEKG EWIYLQPLLS
QSSANVVVRP LNSYVSGTFV TPKTEILIGS SLYSQDIEAL EEIAQSHSEV SR
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